Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00897
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31443| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.088
SB_50530| Best HMM Match : Pencillinase_R (HMM E-Value=3.3)            33   0.27 
SB_4035| Best HMM Match : DUF1279 (HMM E-Value=0.15)                   31   0.62 
SB_49798| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.82 
SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)                   31   1.1  
SB_38431| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_23348| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_21874| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_7062| Best HMM Match : AMP-binding (HMM E-Value=1.4e-18)            29   4.4  
SB_56042| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_38726| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_59169| Best HMM Match : Sre (HMM E-Value=3.3)                       28   7.6  
SB_21917| Best HMM Match : CXC (HMM E-Value=0.22)                      28   7.6  

>SB_31443| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 779

 Score = 34.3 bits (75), Expect = 0.088
 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
 Frame = +3

Query: 15  RAPPKLKTQQSNNKRIREPNEEDLKQSNKKTKLISC-TGTFET----AVNDKSMSNQNDA 179
           R  P L+T++   KR+RE  EE   ++ +  K+ SC +GT ++    A N K   + + +
Sbjct: 398 RKGPSLETREKMKKRLREIREEFGSEAPRFVKMASCSSGTNQSGKDQAKNRKRKDSDSSS 457

Query: 180 QESEPINYDVIMDQ 221
            ESE  + D   D+
Sbjct: 458 DESESGSTDESFDE 471


>SB_50530| Best HMM Match : Pencillinase_R (HMM E-Value=3.3)
          Length = 356

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 500 FHYWLSFEIQYDFHKQKIY-FHYPFDFYFH 414
           +HY   +   YD+H    Y +HY +D+++H
Sbjct: 316 YHYHYDYHYHYDYHYDYHYDYHYHYDYHYH 345



 Score = 30.3 bits (65), Expect = 1.4
 Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 509 DLAFHYWLSFEIQYDFHKQKIY-FHYPFDFYF 417
           D  +HY   ++  YD+H    Y +HY + +Y+
Sbjct: 321 DYHYHYDYHYDYHYDYHYHYDYHYHYDYQYYY 352


>SB_4035| Best HMM Match : DUF1279 (HMM E-Value=0.15)
          Length = 1575

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = +3

Query: 459 VKIILNFKRQPIVKCQIST*AHGRYTNTCPVSKCQNTTRMLES 587
           V  +L  KRQ  V C++ T A G  T+ CP   CQ+ TR+ ES
Sbjct: 389 VSSVLRGKRQVSVNCRMMTTAKG--THLCPA--CQHVTRLDES 427


>SB_49798| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1137

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
 Frame = +2

Query: 275 KEASNLLEKTVENHTTATQD----QFISKTQRSIVECFTTDKTLA-NSQTVNENKNQKDS 439
           ++A+N  + T   HTT TQ     Q  + TQ++     TTD   A N+Q   + +   D+
Sbjct: 274 QQATNTQQTTDTQHTTDTQQATNTQQTTDTQQTSSTQHTTDTQQATNTQHTTDTQQTTDT 333

Query: 440 ENIFSVCENHTEFQKTTNSE 499
           +   S  ++ T+ Q+ TN++
Sbjct: 334 QQTSST-QHTTDTQQATNTQ 352


>SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 2675

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/72 (26%), Positives = 28/72 (38%)
 Frame = +2

Query: 299 KTVENHTTATQDQFISKTQRSIVECFTTDKTLANSQTVNENKNQKDSENIFSVCENHTEF 478
           K  +N+T   Q      T     + +TT+   AN+   N N    D+ N     +N    
Sbjct: 550 KEADNYTPDNQTTNNRATDNRASDDYTTNDEEANNYKTNNNAPDDDTTN-HEATDNDAPD 608

Query: 479 QKTTNSEMPDQY 514
             TT  + PD Y
Sbjct: 609 HNTTYYDTPDDY 620


>SB_38431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1042

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 24/80 (30%), Positives = 34/80 (42%)
 Frame = +3

Query: 21   PPKLKTQQSNNKRIREPNEEDLKQSNKKTKLISCTGTFETAVNDKSMSNQNDAQESEPIN 200
            PP  +     +  I E    D  QSN KT L+S         +D +M +     E+EP N
Sbjct: 866  PPLARASSLEDSDI-EIKPIDGDQSNDKTPLVSDDSDKTECQSDDNMQSNT---ETEPAN 921

Query: 201  YDVIMDQVFANIDADIEDQE 260
                 DQ   NI+ D + Q+
Sbjct: 922  EAQSPDQEVDNIECDSQKQQ 941


>SB_23348| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 232

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +3

Query: 225 FANIDADIEDQEK*KLSKKLPTY*KRL*KIIQPLHKINLLVK-LRDQLWNASPLTKHWP 398
           F  ++ ++EDQ K  +  K+P Y         P+H +N +V  +  +LW+ SPLT  +P
Sbjct: 145 FEAMEMNLEDQNKVSILIKIPFY-------NAPMH-VNFIVNDMICKLWHISPLTPTYP 195


>SB_21874| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 608

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +2

Query: 296 EKTVENHTTATQDQFISKTQRSIVECFTTDKTLANSQTVNENKNQ-KDSENIFSVCENHT 472
           +KT EN     +++  +K  +   +    DKT  N    NENK++ K++++     +N T
Sbjct: 476 DKTKENKDKTKENKDKTKENKDKTKN-NKDKTKENKDKTNENKDKTKENKDKTKENKNKT 534

Query: 473 EFQKTTN 493
           +  KT N
Sbjct: 535 KENKTAN 541


>SB_7062| Best HMM Match : AMP-binding (HMM E-Value=1.4e-18)
          Length = 817

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -3

Query: 559 HFETGQVLVYLPCAYVLIWHFTIGCLLKFSMIFTNRKY 446
           H   G +LVYL   +V  W   I C+  FS  F  R+Y
Sbjct: 219 HHGKGYLLVYLQI-HVFWWKKRIACISVFSTFFVVRQY 255


>SB_56042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 239

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/55 (25%), Positives = 31/55 (56%)
 Frame = +3

Query: 42  QSNNKRIREPNEEDLKQSNKKTKLISCTGTFETAVNDKSMSNQNDAQESEPINYD 206
           Q ++K ++E  E  L+ + ++TK    +  F+T +ND S   Q++ + +E +  +
Sbjct: 184 QRHSKLVKE--ECQLRAAEEETKRKELSDKFQTTINDISQQMQDNFKRNEQLKQE 236


>SB_38726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 749

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/68 (20%), Positives = 32/68 (47%)
 Frame = +2

Query: 320 TATQDQFISKTQRSIVECFTTDKTLANSQTVNENKNQKDSENIFSVCENHTEFQKTTNSE 499
           T  +++   +TQRS    F   + L + + +N  ++ + +  +FS      EF++   + 
Sbjct: 254 TEVKERLSVRTQRSACLIFQLRRGLRDKKGINSEEDNRLARGVFSAVRASIEFRRRIQNF 313

Query: 500 MPDQYIST 523
           +   Y+ T
Sbjct: 314 LLCFYVPT 321


>SB_59169| Best HMM Match : Sre (HMM E-Value=3.3)
          Length = 447

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +2

Query: 317 TTATQDQFISKTQRSIVECFTTDKTLANSQTVNENKNQKDSENIFSVC 460
           TT T D FIS T      C TT     N+   N+N N  ++E    +C
Sbjct: 288 TTTTTD-FISTT----TICITTTANERNNNNYNQNNNNNNNERSSLIC 330


>SB_21917| Best HMM Match : CXC (HMM E-Value=0.22)
          Length = 470

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = +2

Query: 224 ICKH*C*YRRSRKIKTVKEASNLLEKTVENHTTATQDQFISKTQRSIVECFTTDKTLANS 403
           IC+  C Y   R +  V E S++ +  V +   A ++ +I   +R++  C +T K   ++
Sbjct: 255 ICQMACTYALERPVAVVAEDSDVFQLLVHHTDLAARNVYIVTAKRTV--CASTIKRRVDT 312

Query: 404 Q 406
           Q
Sbjct: 313 Q 313


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,408,908
Number of Sequences: 59808
Number of extensions: 290302
Number of successful extensions: 1244
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1222
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)