Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00897
(654 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z77667-6|CAB01235.2| 870|Caenorhabditis elegans Hypothetical pr... 31 0.94
AF416567-1|AAL27004.1| 870|Caenorhabditis elegans nuclear zinc ... 31 0.94
Z81050-1|CAB02850.1| 582|Caenorhabditis elegans Hypothetical pr... 29 2.9
AF016671-6|AAK73904.1| 979|Caenorhabditis elegans Adaptin or ad... 29 2.9
AF016671-5|AAB66112.2| 1251|Caenorhabditis elegans Adaptin or ad... 29 2.9
U41272-2|AAA82447.1| 143|Caenorhabditis elegans Hypothetical pr... 29 3.8
U29097-1|AAA68411.1| 1490|Caenorhabditis elegans Hypothetical pr... 29 3.8
AL117195-12|CAB60765.1| 425|Caenorhabditis elegans Hypothetical... 29 3.8
Z83238-10|CAE17930.1| 177|Caenorhabditis elegans Hypothetical p... 28 6.7
AL110479-12|CAB54358.1| 192|Caenorhabditis elegans Hypothetical... 28 6.7
AF440512-1|AAL34100.1| 192|Caenorhabditis elegans SKR-10 protein. 28 6.7
Z83241-5|CAH10791.1| 1183|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z83241-4|CAB05819.3| 1181|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z82266-15|CAD36491.1| 608|Caenorhabditis elegans Hypothetical p... 27 8.8
Z82266-14|CAD36490.1| 467|Caenorhabditis elegans Hypothetical p... 27 8.8
Z82266-10|CAJ80811.1| 331|Caenorhabditis elegans Hypothetical p... 27 8.8
Z81120-11|CAH10815.1| 1183|Caenorhabditis elegans Hypothetical p... 27 8.8
Z81120-10|CAB03350.3| 1181|Caenorhabditis elegans Hypothetical p... 27 8.8
Z68213-9|CAD37352.1| 608|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z68213-8|CAA92439.3| 467|Caenorhabditis elegans Hypothetical pr... 27 8.8
U88175-1|AAB42281.2| 391|Caenorhabditis elegans Hypothetical pr... 27 8.8
AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical... 27 8.8
AC024824-1|AAK85503.1| 679|Caenorhabditis elegans Hypothetical ... 27 8.8
>Z77667-6|CAB01235.2| 870|Caenorhabditis elegans Hypothetical
protein M04B2.1 protein.
Length = 870
Score = 30.7 bits (66), Expect = 0.94
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = +1
Query: 508 SVHKHMEDTLTPALSQN---VKTPLECLKASDDDCDSVVE-ETP 627
+ K ED+ P + QN VK P+EC++ DDD D + E TP
Sbjct: 177 ATEKEPEDSSMP-VEQNGKGVKRPVECIELDDDDDDEIQEISTP 219
>AF416567-1|AAL27004.1| 870|Caenorhabditis elegans nuclear zinc
finger protein protein.
Length = 870
Score = 30.7 bits (66), Expect = 0.94
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = +1
Query: 508 SVHKHMEDTLTPALSQN---VKTPLECLKASDDDCDSVVE-ETP 627
+ K ED+ P + QN VK P+EC++ DDD D + E TP
Sbjct: 177 ATEKEPEDSSMP-VEQNGKGVKRPVECIELDDDDDDEIQEISTP 219
>Z81050-1|CAB02850.1| 582|Caenorhabditis elegans Hypothetical
protein C50B6.2 protein.
Length = 582
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +2
Query: 296 EKTVENHTTATQDQFISKTQRSIVECFTTDKTLANSQTVNENK-NQKDSENIFSVCENHT 472
++T+ + +T ++ ++ T + +TD N +T +EN + + ++ V E T
Sbjct: 15 KETIAKNVDSTGEEKVAMTNVAEETTPSTDSATTNEKTASENSPTEAAASDVKDVAEAST 74
Query: 473 EFQKT-TNSEMP 505
Q+T T+SE P
Sbjct: 75 GAQETNTSSETP 86
>AF016671-6|AAK73904.1| 979|Caenorhabditis elegans Adaptin or
adaptin-related proteinprotein 5, isoform b protein.
Length = 979
Score = 29.1 bits (62), Expect = 2.9
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
Frame = +3
Query: 6 LTPRAP----PKLKTQQSNNKRIREPNEEDLKQSNKKTKLISCTGTFETAVNDKSMSNQN 173
L PR P P+L QQ +EP + +K+ KKT + T T + K ++
Sbjct: 609 LVPRPPTTFEPRLVAQQ------QEPAVKLVKEKKKKTGKKTTTATAVAKLKKKKSLPES 662
Query: 174 DAQESEPINYDVIMDQVFANIDADIEDQEK*KLSKKLP 287
A +S N D +D N+ D + K L+ + P
Sbjct: 663 SASKSNLFNMDDWLDGSNGNVPIDSTLEMKSTLNVEKP 700
>AF016671-5|AAB66112.2| 1251|Caenorhabditis elegans Adaptin or
adaptin-related proteinprotein 5, isoform a protein.
Length = 1251
Score = 29.1 bits (62), Expect = 2.9
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
Frame = +3
Query: 6 LTPRAP----PKLKTQQSNNKRIREPNEEDLKQSNKKTKLISCTGTFETAVNDKSMSNQN 173
L PR P P+L QQ +EP + +K+ KKT + T T + K ++
Sbjct: 881 LVPRPPTTFEPRLVAQQ------QEPAVKLVKEKKKKTGKKTTTATAVAKLKKKKSLPES 934
Query: 174 DAQESEPINYDVIMDQVFANIDADIEDQEK*KLSKKLP 287
A +S N D +D N+ D + K L+ + P
Sbjct: 935 SASKSNLFNMDDWLDGSNGNVPIDSTLEMKSTLNVEKP 972
>U41272-2|AAA82447.1| 143|Caenorhabditis elegans Hypothetical
protein T03G11.5 protein.
Length = 143
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +1
Query: 532 TLTPALSQNVKTPLECLK--ASDDDCDSVVEETPQKC 636
T++PAL+ +E K S D C+ V+ PQKC
Sbjct: 37 TISPALADVFSRQIEMSKIETSSDPCECEVKHCPQKC 73
>U29097-1|AAA68411.1| 1490|Caenorhabditis elegans Hypothetical
protein F18C5.3 protein.
Length = 1490
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/71 (22%), Positives = 33/71 (46%)
Frame = +2
Query: 293 LEKTVENHTTATQDQFISKTQRSIVECFTTDKTLANSQTVNENKNQKDSENIFSVCENHT 472
+EK D+ + + +++E F +L + + +KNQ+D +++ S E HT
Sbjct: 506 VEKATATKDNEFTDKALVRIVVAVIEAFHFGVSLEDGEKFEISKNQEDEQDV-SKNEKHT 564
Query: 473 EFQKTTNSEMP 505
Q+ +P
Sbjct: 565 ILQRINRVILP 575
>AL117195-12|CAB60765.1| 425|Caenorhabditis elegans Hypothetical
protein Y57A10A.19 protein.
Length = 425
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/68 (22%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +3
Query: 63 REPNEEDLKQSNKKTKLISCTGTFETAVNDKSMSNQNDAQESEPINYDVI--MDQVFANI 236
R+PNEE + + K+ + CT FE + DK + +++ ++ +++ ++ N+
Sbjct: 50 RKPNEEIMDHNRKRQIEVKCT-EFEMLLEDKGLDDEDIERKVGEYRKNLLKQLESGELNV 108
Query: 237 DADIEDQE 260
D ++ +E
Sbjct: 109 DEELSTKE 116
>Z83238-10|CAE17930.1| 177|Caenorhabditis elegans Hypothetical
protein T08G3.13 protein.
Length = 177
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +1
Query: 517 KHMEDTLTPALSQNVKTPLECLKASDDDCDSVVEETPQ 630
K+ EDT +PA SQ L+ L ASD + V ETP+
Sbjct: 105 KNSEDTNSPAASQR----LDTLSASDQPVITEVPETPR 138
>AL110479-12|CAB54358.1| 192|Caenorhabditis elegans Hypothetical
protein Y105C5B.13 protein.
Length = 192
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +3
Query: 12 PRAPPKLKTQQSNNKRIREPNEEDLKQSNKKTKLISCTGTFETAVND 152
P A P + +SN+ + E ++E +KQSN + LIS + A D
Sbjct: 14 PVAAPIMYKVESNDGTVFEISDEAVKQSNTLSNLISTCAPEDVASMD 60
>AF440512-1|AAL34100.1| 192|Caenorhabditis elegans SKR-10 protein.
Length = 192
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +3
Query: 12 PRAPPKLKTQQSNNKRIREPNEEDLKQSNKKTKLISCTGTFETAVND 152
P A P + +SN+ + E ++E +KQSN + LIS + A D
Sbjct: 14 PVAAPIMYKVESNDGTVFEISDEAVKQSNTLSNLISTCAPEDVASMD 60
>Z83241-5|CAH10791.1| 1183|Caenorhabditis elegans Hypothetical
protein T12D8.9b protein.
Length = 1183
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Frame = +3
Query: 24 PKLKTQQSNNKRIREP------NEEDLKQSNKKTKLISCTGTFETAVNDKSMSNQNDAQE 185
P+ + + N+KR++EP E +K+S + K + + A K N+ E
Sbjct: 691 PEKNSNKKNSKRVKEPEPEPEEEPEPVKKSKRSLKKVK-VAVPDPAPESKDEENEESVSE 749
Query: 186 SEP 194
EP
Sbjct: 750 QEP 752
>Z83241-4|CAB05819.3| 1181|Caenorhabditis elegans Hypothetical
protein T12D8.9a protein.
Length = 1181
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Frame = +3
Query: 24 PKLKTQQSNNKRIREP------NEEDLKQSNKKTKLISCTGTFETAVNDKSMSNQNDAQE 185
P+ + + N+KR++EP E +K+S + K + + A K N+ E
Sbjct: 689 PEKNSNKKNSKRVKEPEPEPEEEPEPVKKSKRSLKKVK-VAVPDPAPESKDEENEESVSE 747
Query: 186 SEP 194
EP
Sbjct: 748 QEP 750
>Z82266-15|CAD36491.1| 608|Caenorhabditis elegans Hypothetical
protein C01F6.6b protein.
Length = 608
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/64 (23%), Positives = 31/64 (48%)
Frame = +3
Query: 48 NNKRIREPNEEDLKQSNKKTKLISCTGTFETAVNDKSMSNQNDAQESEPINYDVIMDQVF 227
N I+ E ++ + T+ + T + +A K S DA + P++ + +MD+VF
Sbjct: 417 NPHSIQVNEEREISKMTTTTRTETITNS-NSAYQYKESSTAYDAYATPPVDSNDLMDEVF 475
Query: 228 ANID 239
++
Sbjct: 476 GRVN 479
>Z82266-14|CAD36490.1| 467|Caenorhabditis elegans Hypothetical
protein C01F6.6a protein.
Length = 467
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/64 (23%), Positives = 31/64 (48%)
Frame = +3
Query: 48 NNKRIREPNEEDLKQSNKKTKLISCTGTFETAVNDKSMSNQNDAQESEPINYDVIMDQVF 227
N I+ E ++ + T+ + T + +A K S DA + P++ + +MD+VF
Sbjct: 276 NPHSIQVNEEREISKMTTTTRTETITNS-NSAYQYKESSTAYDAYATPPVDSNDLMDEVF 334
Query: 228 ANID 239
++
Sbjct: 335 GRVN 338
>Z82266-10|CAJ80811.1| 331|Caenorhabditis elegans Hypothetical
protein C01F6.6e protein.
Length = 331
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/64 (23%), Positives = 31/64 (48%)
Frame = +3
Query: 48 NNKRIREPNEEDLKQSNKKTKLISCTGTFETAVNDKSMSNQNDAQESEPINYDVIMDQVF 227
N I+ E ++ + T+ + T + +A K S DA + P++ + +MD+VF
Sbjct: 140 NPHSIQVNEEREISKMTTTTRTETITNS-NSAYQYKESSTAYDAYATPPVDSNDLMDEVF 198
Query: 228 ANID 239
++
Sbjct: 199 GRVN 202
>Z81120-11|CAH10815.1| 1183|Caenorhabditis elegans Hypothetical
protein T12D8.9b protein.
Length = 1183
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Frame = +3
Query: 24 PKLKTQQSNNKRIREP------NEEDLKQSNKKTKLISCTGTFETAVNDKSMSNQNDAQE 185
P+ + + N+KR++EP E +K+S + K + + A K N+ E
Sbjct: 691 PEKNSNKKNSKRVKEPEPEPEEEPEPVKKSKRSLKKVK-VAVPDPAPESKDEENEESVSE 749
Query: 186 SEP 194
EP
Sbjct: 750 QEP 752
>Z81120-10|CAB03350.3| 1181|Caenorhabditis elegans Hypothetical
protein T12D8.9a protein.
Length = 1181
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Frame = +3
Query: 24 PKLKTQQSNNKRIREP------NEEDLKQSNKKTKLISCTGTFETAVNDKSMSNQNDAQE 185
P+ + + N+KR++EP E +K+S + K + + A K N+ E
Sbjct: 689 PEKNSNKKNSKRVKEPEPEPEEEPEPVKKSKRSLKKVK-VAVPDPAPESKDEENEESVSE 747
Query: 186 SEP 194
EP
Sbjct: 748 QEP 750
>Z68213-9|CAD37352.1| 608|Caenorhabditis elegans Hypothetical
protein C01F6.6b protein.
Length = 608
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/64 (23%), Positives = 31/64 (48%)
Frame = +3
Query: 48 NNKRIREPNEEDLKQSNKKTKLISCTGTFETAVNDKSMSNQNDAQESEPINYDVIMDQVF 227
N I+ E ++ + T+ + T + +A K S DA + P++ + +MD+VF
Sbjct: 417 NPHSIQVNEEREISKMTTTTRTETITNS-NSAYQYKESSTAYDAYATPPVDSNDLMDEVF 475
Query: 228 ANID 239
++
Sbjct: 476 GRVN 479
>Z68213-8|CAA92439.3| 467|Caenorhabditis elegans Hypothetical
protein C01F6.6a protein.
Length = 467
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/64 (23%), Positives = 31/64 (48%)
Frame = +3
Query: 48 NNKRIREPNEEDLKQSNKKTKLISCTGTFETAVNDKSMSNQNDAQESEPINYDVIMDQVF 227
N I+ E ++ + T+ + T + +A K S DA + P++ + +MD+VF
Sbjct: 276 NPHSIQVNEEREISKMTTTTRTETITNS-NSAYQYKESSTAYDAYATPPVDSNDLMDEVF 334
Query: 228 ANID 239
++
Sbjct: 335 GRVN 338
>U88175-1|AAB42281.2| 391|Caenorhabditis elegans Hypothetical
protein F21F3.4 protein.
Length = 391
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 278 EASNLLEKTVENHTTATQDQFISKTQRSIVECFTTDKTLANSQT 409
E +L++ E+H TA + F K + I ECF D L QT
Sbjct: 76 ENEHLVKHLKEHHMTAFEYIFTKKIKIQIGECFVQDGFLWWKQT 119
>AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical
protein Y47D3A.26 protein.
Length = 1205
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/38 (34%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +3
Query: 138 TAVNDKSMSNQNDAQE-SEPINYDVIMDQVFANIDADI 248
+A + +SN ++A+ S+ I+Y+V D+VF +I A++
Sbjct: 598 SAPRQRDLSNNSNARPMSDVIDYEVQYDKVFKSITANV 635
>AC024824-1|AAK85503.1| 679|Caenorhabditis elegans Hypothetical
protein Y55B1BR.3 protein.
Length = 679
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/64 (29%), Positives = 34/64 (53%)
Frame = +3
Query: 90 QSNKKTKLISCTGTFETAVNDKSMSNQNDAQESEPINYDVIMDQVFANIDADIEDQEK*K 269
+ +KK+K + + AVND S ++++ ++ E + A ID+ ED+E+ K
Sbjct: 262 KKSKKSKKFKKSEKRKRAVNDSSSDDEDEEEKPEKRS----KKSKKAVIDSSSEDEEEEK 317
Query: 270 LSKK 281
SKK
Sbjct: 318 SSKK 321
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,511,025
Number of Sequences: 27780
Number of extensions: 235502
Number of successful extensions: 890
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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