Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00897
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      30   0.017
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.84 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   2.6  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   7.9  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   7.9  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    21   7.9  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 30.3 bits (65), Expect = 0.017
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 24  PKLKTQQSNNKRIREPNEEDLKQSNKKTKLISCTG-TFETAVNDKSMSNQNDAQESEPIN 200
           P+   ++  +  I   +E +   S+ KTK+   +G TFE   N + M+N  + Q ++ +N
Sbjct: 211 PRNGKRKRKSSTIENESETESNASSTKTKMRRKSGATFEEIQNQRVMANVRERQRTQSLN 270


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +3

Query: 54   KRIREPNEEDLKQSNKKTKLISCTGTFETAVNDKSMSNQNDAQ 182
            + +  P + D KQS+ KTK  S       A N +  +  N  Q
Sbjct: 1083 RHLMRPRKRDQKQSDDKTKETSTVTAAAAATNIRPGTADNKPQ 1125


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +2

Query: 275 KEASNLLEKTVENHTTATQDQFISKTQRSIVECFTTDKTLANSQTVN 415
           +EA +LL    +N+T     + ++K   + +   + +  L  +QTVN
Sbjct: 500 EEAVSLLINFSKNNTIVDISKLVNKRNNAKIYTSSVNSNLTVNQTVN 546


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 13/71 (18%), Positives = 27/71 (38%)
 Frame = +2

Query: 245 YRRSRKIKTVKEASNLLEKTVENHTTATQDQFISKTQRSIVECFTTDKTLANSQTVNENK 424
           Y+  R+ +  +E S    +       + + + IS    + +          N+   N N 
Sbjct: 49  YKNEREYRKYRETSKERSRDRTERERSREPKIISSLSNNTIHNNNYKYNYNNNNYNNNNY 108

Query: 425 NQKDSENIFSV 457
           N+K   NI ++
Sbjct: 109 NKKLYYNIINI 119


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 13/71 (18%), Positives = 27/71 (38%)
 Frame = +2

Query: 245 YRRSRKIKTVKEASNLLEKTVENHTTATQDQFISKTQRSIVECFTTDKTLANSQTVNENK 424
           Y+  R+ +  +E S    +       + + + IS    + +          N+   N N 
Sbjct: 49  YKNEREYRKYRETSKERSRDRAERERSREPKIISSLSNNTIHNNNYKYNYNNNNYNNNNY 108

Query: 425 NQKDSENIFSV 457
           N+K   NI ++
Sbjct: 109 NKKLYYNIINI 119


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 419 NKNQKDSENIFSVCE 463
           N+N   S+N+F+ CE
Sbjct: 44  NRNAIQSDNVFANCE 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,800
Number of Sequences: 438
Number of extensions: 2616
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)