Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00897
         (654 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g16640.1 68415.m01910 chloroplast outer membrane protein, put...    31   0.51 
At4g20160.1 68417.m02949 expressed protein ; expression supporte...    31   0.88 
At1g08730.1 68414.m00969 myosin heavy chain (PCR43) identical to...    29   2.7  
At5g52950.1 68418.m06570 expressed protein ; expression supporte...    29   3.6  
At4g13660.1 68417.m02124 pinoresinol-lariciresinol reductase, pu...    28   4.7  
At1g66830.1 68414.m07596 leucine-rich repeat transmembrane prote...    28   4.7  
At4g15260.1 68417.m02338 UDP-glucoronosyl/UDP-glucosyl transfera...    27   8.2  
At4g11120.1 68417.m01804 translation elongation factor Ts (EF-Ts...    27   8.2  
At3g28970.1 68416.m03621 expressed protein contains Pfam domain ...    27   8.2  

>At2g16640.1 68415.m01910 chloroplast outer membrane protein,
           putative similar to chloroplast protein import component
           Toc159 [Pisum sativum] GI:8489806, chloroplast outer
           envelope protein 86 [Pisum sativum] GI:599958,
           GTP-binding protein [Pisum sativum] GI:576509
          Length = 1206

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
 Frame = +2

Query: 296 EKTVENHTTATQDQFISKTQRSIVECFTTDKTLANSQTVNE-NKNQKDSENIF---SVCE 463
           E+ VE     T++QF  +T+  +VE   T K L   QT  +  + +  S+++F   SVC 
Sbjct: 235 EQEVEEGEGTTENQFEKRTEEEVVEGEGTSKNLFEKQTEQDVVEGEGTSKDLFENGSVCM 294

Query: 464 NHTEFQKTTNSEMPDQYIS 520
           + +E +   N E    Y S
Sbjct: 295 D-SESEAERNGETGAAYTS 312


>At4g20160.1 68417.m02949 expressed protein ; expression supported by
            MPSS
          Length = 1188

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 20/76 (26%), Positives = 34/76 (44%)
 Frame = +2

Query: 296  EKTVENHTTATQDQFISKTQRSIVECFTTDKTLANSQTVNENKNQKDSENIFSVCENHTE 475
            EK+V +H +  +D+  +  Q     CF  +    +++ +  NK+Q+ S+   S      E
Sbjct: 799  EKSV-SHGSREKDKERNSLQYGEKMCFLRNSEAKSTKEIERNKSQEVSQGEESASHGSRE 857

Query: 476  FQKTTNSEMPDQYIST 523
              K  NS   D   ST
Sbjct: 858  SAKEKNSSQQDDETST 873


>At1g08730.1 68414.m00969 myosin heavy chain (PCR43) identical to
            myosin heavy chain PCR43 (PIR:T00727) [Arabidopsis
            thaliana]; similar to ESTs gb|R30087 and gb|AA394762
          Length = 1538

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 24/84 (28%), Positives = 36/84 (42%)
 Frame = +2

Query: 254  SRKIKTVKEASNLLEKTVENHTTATQDQFISKTQRSIVECFTTDKTLANSQTVNENKNQK 433
            +R+   +KEA ++LEK VE  T   Q   + K  R  +E   T + L    +  E + + 
Sbjct: 889  ARETGALKEAKDMLEKKVEELTYRVQ---LEKRSRGDLEEAKTQEILKLKSSFEEMRKKV 945

Query: 434  DSENIFSVCENHTEFQKTTNSEMP 505
            D  N   + E   E  K    E P
Sbjct: 946  DETNALLLKER--EAAKKAAEEAP 967


>At5g52950.1 68418.m06570 expressed protein ; expression supported
           by MPSS
          Length = 945

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +2

Query: 380 TDKTLANSQTVNENKNQKDSENIFSVCENHTEFQKTTNSEMP 505
           TD+ L +S   NE+ +Q   ENI S  +NH   Q  +N ++P
Sbjct: 788 TDEDLEDSFMNNEDSSQSGRENIHSNFKNHHHSQ--SNEDVP 827


>At4g13660.1 68417.m02124 pinoresinol-lariciresinol reductase,
           putative similar to pinoresinol-lariciresinol reductase
           TH1 [Tsuga heterophylla][GI:7578915]; contains
           isoflavone reductase domain PF02716
          Length = 317

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +2

Query: 380 TDKTLANSQTVNENKNQKDSENIFSVCENHTEFQKTTNSEMPDQYIS 520
           T KTL + +T+N+    + ++NI +  E    ++K T  E+   Y+S
Sbjct: 209 TAKTLNDPRTLNKTVYVRPTDNILTQMELVQIWEKLTEKELEKTYVS 255


>At1g66830.1 68414.m07596 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profiles: PF00069:
           Eukaryotic protein kinase domain, multiple PF00560:
           Leucine Rich Repeat
          Length = 685

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +2

Query: 308 ENHTTATQDQFISKTQRSIVECFTTDKTLANSQTVNENKNQK 433
           +N+ T   ++ + KT +    CF T  +   S+T++ENKNQ+
Sbjct: 340 QNNRTCHINEKLKKTTKPEFLCFKTGNS--ESETLDENKNQQ 379


>At4g15260.1 68417.m02338 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 359

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 550 SQNVKTPLECLKASDDDCDSVVEETPQKCH 639
           +++++  + C+   D D  S V+E  +KCH
Sbjct: 305 AEDIERAIRCVMEQDSDVRSRVKEMAEKCH 334


>At4g11120.1 68417.m01804 translation elongation factor Ts (EF-Ts),
           putative similar to ethylene-responsive elongation
           factor EF-Ts precursor [Lycopersicon esculentum]
           GI:5669636; contains Pfam profile PF00889: Elongation
           factor TS
          Length = 395

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 18  APPKLKTQQSNNKRIREPNEEDLKQSNKKTKLISCTGTFETAVND 152
           APP +  Q S  K++RE     +K  + K  L+ C    E A  D
Sbjct: 67  APPAVSDQMSLIKQLRERTSAPIK--DVKASLVECNWDLEAAQKD 109


>At3g28970.1 68416.m03621 expressed protein contains Pfam domain
           PF03556: Domain of unknown function (DUF298)
          Length = 295

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +2

Query: 338 FISKTQRSIVECFTTDKTLANSQTVNENKNQKDSENIFSV 457
           FI K QR  +   T  + LA S+ V+EN    DSE  + V
Sbjct: 131 FIEKNQRHNISEDTWQQVLAFSRCVHENLEGYDSEGAWPV 170


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,446,238
Number of Sequences: 28952
Number of extensions: 202080
Number of successful extensions: 680
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)