Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00896
(666 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 143 4e-33
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 142 9e-33
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 124 2e-27
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 123 4e-27
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 99 6e-27
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 110 3e-23
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 105 1e-21
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 104 2e-21
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 103 5e-21
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 96 8e-19
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 83 4e-15
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 63 7e-09
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 56 1e-06
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 49 1e-04
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 49 1e-04
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 48 2e-04
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 47 4e-04
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 43 0.006
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 43 0.008
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 42 0.018
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 39 0.094
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 39 0.12
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 38 0.22
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 38 0.29
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 37 0.50
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 36 0.66
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 36 1.2
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 36 1.2
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 36 1.2
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 35 1.5
UniRef50_Q0RWF5 Cluster: Transposase; n=7; Rhodococcus|Rep: Tran... 34 3.5
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 34 3.5
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 33 4.7
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 33 8.2
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 143 bits (346), Expect = 4e-33
Identities = 62/84 (73%), Positives = 73/84 (86%)
Frame = +2
Query: 257 ELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKV 436
E FRLIYD KGRF +HRITPEEAKYKLCKV+++ G K +P+LVTHD RTIRYPDPLIKV
Sbjct: 97 ENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKV 156
Query: 437 NDSIQLDIATTKIMDFIKFESGNL 508
ND+IQ+D+ T KI DFIKF++GNL
Sbjct: 157 NDTIQIDLETGKITDFIKFDTGNL 180
Score = 98.7 bits (235), Expect = 1e-19
Identities = 44/54 (81%), Positives = 49/54 (90%)
Frame = +1
Query: 1 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 162
R+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+E K+
Sbjct: 11 RVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKI 64
Score = 78.2 bits (184), Expect = 2e-13
Identities = 31/46 (67%), Positives = 41/46 (89%)
Frame = +1
Query: 505 LGMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNV 642
L M+TGG NLGR+G I +RERHPGSFD+VH+KD+ G++FATRL+N+
Sbjct: 180 LCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNI 225
Score = 59.3 bits (137), Expect = 8e-08
Identities = 26/35 (74%), Positives = 30/35 (85%)
Frame = +3
Query: 150 ILKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKT 254
+ KI QR IK+DGKVRTD TYPAGFMDV+SI+KT
Sbjct: 61 VKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKT 95
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 142 bits (343), Expect = 9e-33
Identities = 63/84 (75%), Positives = 72/84 (85%)
Frame = +2
Query: 257 ELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKV 436
E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+ G K VP+LVTHDGRTIRYPDPLI
Sbjct: 97 EFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHA 156
Query: 437 NDSIQLDIATTKIMDFIKFESGNL 508
NDS+Q+DIA+ KI D+IKF+SGNL
Sbjct: 157 NDSVQVDIASGKITDYIKFDSGNL 180
Score = 97.5 bits (232), Expect = 3e-19
Identities = 45/54 (83%), Positives = 48/54 (88%)
Frame = +1
Query: 1 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 162
RL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E K+
Sbjct: 11 RLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKI 64
Score = 88.6 bits (210), Expect = 1e-16
Identities = 40/46 (86%), Positives = 42/46 (91%)
Frame = +1
Query: 505 LGMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNV 642
L MITGGRNLGRVGT+V+RERHPGSFDIVHIKDS GH FATRL NV
Sbjct: 180 LCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNV 225
Score = 65.7 bits (153), Expect = 9e-10
Identities = 28/39 (71%), Positives = 34/39 (87%)
Frame = +3
Query: 150 ILKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTMNCF 266
+ KIV QRL+KVDGKVRTDPTYPAG+MDV+++EKT F
Sbjct: 61 VTKIVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFF 99
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 124 bits (299), Expect = 2e-27
Identities = 53/77 (68%), Positives = 65/77 (84%)
Frame = +2
Query: 278 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLD 457
D KGRF +HRITPEEAKYKL KV+++ G K +P+LVTHD RTIRYPDPLIK+ND+IQ+D
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQID 135
Query: 458 IATTKIMDFIKFESGNL 508
+ T KI DF KF++GNL
Sbjct: 136 LETGKITDFFKFDTGNL 152
Score = 95.1 bits (226), Expect = 1e-18
Identities = 42/51 (82%), Positives = 46/51 (90%)
Frame = +1
Query: 10 APKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 162
APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+E K+
Sbjct: 14 APKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKI 64
Score = 76.2 bits (179), Expect = 7e-13
Identities = 30/46 (65%), Positives = 40/46 (86%)
Frame = +1
Query: 505 LGMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNV 642
L M+TGG NLGR+G I +RE HPGSFD+VH+KD+ G++FATRL+N+
Sbjct: 152 LCMVTGGTNLGRIGVITNRENHPGSFDVVHVKDANGNSFATRLSNI 197
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 123 bits (296), Expect = 4e-27
Identities = 54/85 (63%), Positives = 68/85 (80%)
Frame = +2
Query: 257 ELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKV 436
E FRL+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DGRTIRYPDPLIK
Sbjct: 97 ENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKP 156
Query: 437 NDSIQLDIATTKIMDFIKFESGNLV 511
ND+I+LD+ KI++FIKF+ GN+V
Sbjct: 157 NDTIKLDLEENKIVEFIKFDVGNVV 181
Score = 91.5 bits (217), Expect = 2e-17
Identities = 39/50 (78%), Positives = 44/50 (88%)
Frame = +1
Query: 1 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 150
RLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT E
Sbjct: 11 RLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Score = 73.3 bits (172), Expect = 5e-12
Identities = 31/44 (70%), Positives = 37/44 (84%)
Frame = +1
Query: 511 MITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNV 642
M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV
Sbjct: 182 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNV 225
Score = 58.4 bits (135), Expect = 1e-07
Identities = 27/41 (65%), Positives = 32/41 (78%)
Frame = +3
Query: 144 KRILKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTMNCF 266
+ ++ I+ QR I+VDGKVRTD TYPAGFMDVVSI KT F
Sbjct: 59 REVISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENF 99
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 98.7 bits (235), Expect = 1e-19
Identities = 44/54 (81%), Positives = 49/54 (90%)
Frame = +1
Query: 1 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 162
R+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+E K+
Sbjct: 11 RVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKI 64
Score = 96.3 bits (229), Expect(2) = 6e-27
Identities = 39/61 (63%), Positives = 52/61 (85%)
Frame = +2
Query: 326 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGN 505
+YKLCKVK++ G K +P+LVTHD RTIRYPDPLIKVND++++D+ T KI DFIKF++ N
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKITDFIKFDTSN 211
Query: 506 L 508
+
Sbjct: 212 M 212
Score = 81.0 bits (191), Expect = 2e-14
Identities = 32/44 (72%), Positives = 41/44 (93%)
Frame = +1
Query: 511 MITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNV 642
M+TGG NLGR+G I +RERHPGSFD+VH+KDSTG++FATRL+N+
Sbjct: 214 MVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNI 257
Score = 57.6 bits (133), Expect = 3e-07
Identities = 25/35 (71%), Positives = 29/35 (82%)
Frame = +3
Query: 150 ILKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKT 254
+ KI QR IK+DGKVRTD TYP GFMDV+SI+KT
Sbjct: 61 VKKICMQRFIKIDGKVRTDITYPTGFMDVISIDKT 95
Score = 47.6 bits (108), Expect(2) = 6e-27
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = +2
Query: 257 ELFRLIYDVKGRFTIHRITPEEAK 328
E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 97 EHFRLIYDVKGRFTVHRITAEEAK 120
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 110 bits (264), Expect = 3e-23
Identities = 49/84 (58%), Positives = 65/84 (77%)
Frame = +2
Query: 257 ELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKV 436
E +R++YD G F +HRIT +E+ +KLCKV RV+ G K +PY+VTHDGRTIR+P+ LIK
Sbjct: 97 ENYRVLYDNVGHFFLHRITIKESMFKLCKVIRVSIGSKGIPYIVTHDGRTIRFPNLLIKS 156
Query: 437 NDSIQLDIATTKIMDFIKFESGNL 508
NDSI LD+ K++DFIKF G+L
Sbjct: 157 NDSIVLDLLNNKVIDFIKFSIGSL 180
Score = 74.9 bits (176), Expect = 2e-12
Identities = 31/51 (60%), Positives = 41/51 (80%)
Frame = +1
Query: 1 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES 153
RLNAPK W+L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ ES
Sbjct: 11 RLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRES 61
Score = 44.8 bits (101), Expect = 0.002
Identities = 20/39 (51%), Positives = 28/39 (71%)
Frame = +3
Query: 138 DRKRILKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKT 254
+++ L I+K+ I VDGKVR D +PAG MDV+SI+ T
Sbjct: 57 NQRESLNILKKNEIYVDGKVRADKNFPAGVMDVISIKTT 95
Score = 35.9 bits (79), Expect = 0.88
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +1
Query: 496 VWELGMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNV 642
+ L ++ G N+GR+G ++ GS IV +KD G +F+T+ N+
Sbjct: 177 IGSLCVVIKGSNIGRIGVFINTIGGQGSDSIVCLKDFNGSSFSTQTKNL 225
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 105 bits (252), Expect = 1e-21
Identities = 49/94 (52%), Positives = 65/94 (69%)
Frame = +2
Query: 257 ELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKV 436
E F LIY + RF +HRITPEE KYKLCK++++ K +P+LV HD T+R+PD LIKV
Sbjct: 107 EDFCLIYGINRRFALHRITPEEVKYKLCKMRKIFVRAKGIPHLVIHDIHTVRHPDSLIKV 166
Query: 437 NDSIQLDIATTKIMDFIKFESGNLV*SREAVTWG 538
ND+IQ+D+ T KI +KF++GNL WG
Sbjct: 167 NDTIQIDLETGKI-TALKFDTGNLCLVTGGGNWG 199
Score = 81.4 bits (192), Expect = 2e-14
Identities = 40/54 (74%), Positives = 45/54 (83%)
Frame = +1
Query: 1 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 162
R+ A + WMLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALTG+E K+
Sbjct: 22 RVAALQHWMLDKLTGVFAARPSTGPHKLRECLP-HIFLRNRLKYALTGDEVKKI 74
Score = 53.6 bits (123), Expect = 4e-06
Identities = 21/40 (52%), Positives = 30/40 (75%)
Frame = +1
Query: 505 LGMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFA 624
L ++TGG N GR+G I +RERHP SFD H+KD+ ++F+
Sbjct: 189 LCLVTGGGNWGRIGVITNRERHPVSFDTFHVKDANSNSFS 228
Score = 42.3 bits (95), Expect = 0.010
Identities = 23/59 (38%), Positives = 28/59 (47%)
Frame = +3
Query: 75 PQVARVLAPGDFPEESSEVCFDRKRILKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEK 251
P R P F + + KI Q IKVDGK+RTD P MDV+SI+K
Sbjct: 46 PHKLRECLPHIFLRNRLKYALTGDEVKKICMQWFIKVDGKIRTDNNLPYWIMDVISIDK 104
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 104 bits (249), Expect = 2e-21
Identities = 44/83 (53%), Positives = 64/83 (77%)
Frame = +2
Query: 257 ELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKV 436
E FRL+Y+ K RF + +T E+AK+KLCK+++ G +PY+VTHDGRTIRYP P ++
Sbjct: 97 ENFRLMYNTKRRFCLVPLTAEQAKFKLCKIEKRVLGTGAIPYIVTHDGRTIRYPHPELQA 156
Query: 437 NDSIQLDIATTKIMDFIKFESGN 505
ND+I+L++ T KI+DF+KF+ GN
Sbjct: 157 NDTIKLNLETGKIVDFVKFDIGN 179
Score = 83.0 bits (196), Expect = 6e-15
Identities = 34/50 (68%), Positives = 40/50 (80%)
Frame = +1
Query: 1 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 150
RLNAP WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G E
Sbjct: 11 RLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGRE 60
Score = 71.3 bits (167), Expect = 2e-11
Identities = 31/44 (70%), Positives = 36/44 (81%)
Frame = +1
Query: 511 MITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNV 642
M+ GG +GRVG IV RE HPGSF+IVHIKD+ G+TF TRLNNV
Sbjct: 182 MMIGGNGMGRVGVIVKREVHPGSFEIVHIKDAKGNTFTTRLNNV 225
Score = 54.0 bits (124), Expect = 3e-06
Identities = 23/41 (56%), Positives = 29/41 (70%)
Frame = +3
Query: 144 KRILKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTMNCF 266
+ + IVK R IK+DGK+RTD YP GFMDV+SI +T F
Sbjct: 59 REVTMIVKNRTIKIDGKIRTDTRYPVGFMDVLSIPRTKENF 99
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 103 bits (246), Expect = 5e-21
Identities = 43/82 (52%), Positives = 59/82 (71%)
Frame = +2
Query: 263 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVND 442
FR++YD KGRF + ++ EEAKYKL KV A GP +PY+VTHD RTIR+P+P IK+ D
Sbjct: 211 FRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPNPEIKIGD 270
Query: 443 SIQLDIATTKIMDFIKFESGNL 508
+++ D+ KI +F ESGN+
Sbjct: 271 TLKYDLVNNKIENFAHLESGNV 292
Score = 58.4 bits (135), Expect = 1e-07
Identities = 27/49 (55%), Positives = 33/49 (67%)
Frame = +1
Query: 514 ITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVCHNRQG 660
I G N+GRVG I E+H GSFDI H+KD+ G+ FATRL N+ QG
Sbjct: 295 IQQGNNIGRVGIIQHIEKHQGSFDICHVKDAKGNAFATRLGNIFVLGQG 343
Score = 48.8 bits (111), Expect = 1e-04
Identities = 21/33 (63%), Positives = 24/33 (72%)
Frame = +1
Query: 52 APRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 150
A RPS GPHKLRE LPL + L+ RL YAL G +
Sbjct: 138 ATRPSQGPHKLRESLPLSVLLKERLNYALNGRD 170
Score = 42.7 bits (96), Expect = 0.008
Identities = 20/34 (58%), Positives = 23/34 (67%)
Frame = +3
Query: 165 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTMNCF 266
K++ + VDGKVR D YP G MDVV IEKT F
Sbjct: 178 KEQNVFVDGKVRRDKGYPTGLMDVVRIEKTDQSF 211
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 95.9 bits (228), Expect = 8e-19
Identities = 40/84 (47%), Positives = 61/84 (72%)
Frame = +2
Query: 257 ELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKV 436
ELFR+IYD KGRF +H I +EA +KL +V + G K +P++VTHDGRTI Y DP ++V
Sbjct: 111 ELFRIIYDCKGRFCVHHIEAKEASFKLLRVNQFKIGAKGIPHVVTHDGRTISYVDPSVRV 170
Query: 437 NDSIQLDIATTKIMDFIKFESGNL 508
+D+++ +I T ++ IKF+ G++
Sbjct: 171 HDALKFNIKTGEVESVIKFKVGDV 194
Score = 76.6 bits (180), Expect = 5e-13
Identities = 34/51 (66%), Positives = 39/51 (76%)
Frame = +1
Query: 1 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES 153
RL AP W+L K G +A PSTGPHKLRECLP+ IFLR+RLKYALT E+
Sbjct: 25 RLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDRLKYALTAKEA 75
Score = 60.5 bits (140), Expect = 4e-08
Identities = 27/49 (55%), Positives = 36/49 (73%)
Frame = +1
Query: 496 VWELGMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNV 642
V ++ M+T G N+GRVGTI E+ SFDIVH+KD++G FATR+ NV
Sbjct: 191 VGDVAMVTAGGNVGRVGTIQKIEKQMASFDIVHLKDTSGAVFATRIMNV 239
Score = 50.0 bits (114), Expect = 5e-05
Identities = 22/41 (53%), Positives = 29/41 (70%)
Frame = +3
Query: 144 KRILKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTMNCF 266
K + IVK+RL+KVDGKVRT+ YP G MDV+ + K+ F
Sbjct: 73 KEAVAIVKRRLVKVDGKVRTNYRYPTGLMDVIELGKSNELF 113
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 83.4 bits (197), Expect = 4e-15
Identities = 36/50 (72%), Positives = 40/50 (80%)
Frame = +1
Query: 1 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 150
RL APK WML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E
Sbjct: 8 RLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNARE 57
Score = 79.4 bits (187), Expect = 7e-14
Identities = 38/83 (45%), Positives = 49/83 (59%)
Frame = +2
Query: 263 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVND 442
FRL+YDVKGRF + ++ EA+ KL KV + T VP VTHDG IRYPDP + D
Sbjct: 96 FRLMYDVKGRFALVNLSEAEAQIKLMKVVNLYTATGRVPVAVTHDGHRIRYPDPHTSIGD 155
Query: 443 SIQLDIATTKIMDFIKFESGNLV 511
+I ++ K +D IK G V
Sbjct: 156 TIVYNVKEKKCVDLIKNRQGKAV 178
Score = 58.4 bits (135), Expect = 1e-07
Identities = 24/44 (54%), Positives = 33/44 (75%)
Frame = +1
Query: 511 MITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNV 642
++TGG N GR+G IV E HPG+F+I H+KD++G FATR N+
Sbjct: 179 IVTGGANRGRIGEIVKVECHPGAFNIAHLKDASGAEFATRAANI 222
Score = 41.5 bits (93), Expect = 0.018
Identities = 20/36 (55%), Positives = 24/36 (66%)
Frame = +3
Query: 159 IVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTMNCF 266
I++Q L+ VD R D YPAGFMDVV I KT + F
Sbjct: 61 ILRQGLVHVDNHPRRDGKYPAGFMDVVEIPKTGDRF 96
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 62.9 bits (146), Expect = 7e-09
Identities = 29/77 (37%), Positives = 52/77 (67%)
Frame = +2
Query: 257 ELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKV 436
E FR++Y+V +F +HRI+ EEA Y+L KV + + +PY+V+ G +IR+ DP I +
Sbjct: 97 EHFRVLYNVHKKFHLHRISSEEASYRLTKVTKKYEN-QGIPYIVSSCGLSIRFCDPAIDL 155
Query: 437 NDSIQLDIATTKIMDFI 487
+I++ T+K++++I
Sbjct: 156 GYTIKISNETSKVIEYI 172
Score = 58.0 bits (134), Expect = 2e-07
Identities = 24/45 (53%), Positives = 31/45 (68%)
Frame = +1
Query: 1 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 135
R APK+WMLDK GG +A P++GPHK EC+PL + L+YA
Sbjct: 11 RKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYA 55
Score = 41.9 bits (94), Expect = 0.013
Identities = 19/37 (51%), Positives = 27/37 (72%)
Frame = +3
Query: 144 KRILKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKT 254
K + I+ ++ IKV+G+VRT+ +P G DVVSIEKT
Sbjct: 59 KELSIILAEKNIKVNGRVRTNSHFPVGLFDVVSIEKT 95
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 55.6 bits (128), Expect = 1e-06
Identities = 30/83 (36%), Positives = 42/83 (50%)
Frame = +2
Query: 257 ELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKV 436
E +R++Y+ +G + + T E A KL KV+ P N L THDGRT D KV
Sbjct: 91 ESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITDDKSKKV 150
Query: 437 NDSIQLDIATTKIMDFIKFESGN 505
D + + KI + IK + GN
Sbjct: 151 GDVWAVSVPDMKISEIIKMQPGN 173
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 48.8 bits (111), Expect = 1e-04
Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +1
Query: 1 RLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES 153
R AP W + K GGV+ RPS GPH L LPL + +R+ LKYA T +E+
Sbjct: 6 RTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEA 57
Score = 35.1 bits (77), Expect = 1.5
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 159 IVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKT 254
I+ + +KVDG VR D +P G MDV+ I T
Sbjct: 60 IISRGYVKVDGVVRRDYKFPVGLMDVIEIVPT 91
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 48.8 bits (111), Expect = 1e-04
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Frame = +1
Query: 1 RLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 162
RL AP AW + K GG +APRP GPH + +PL+I +R+ L YA E+ K+
Sbjct: 14 RLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREARKI 68
Score = 37.9 bits (84), Expect = 0.22
Identities = 17/33 (51%), Positives = 22/33 (66%)
Frame = +3
Query: 156 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKT 254
KI+ + I VDG VR +P +P G MDVV I +T
Sbjct: 67 KIITRGEIYVDGVVRKEPKFPVGIMDVVEIPRT 99
Score = 32.7 bits (71), Expect = 8.2
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 14/94 (14%)
Frame = +2
Query: 263 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT--IRYPDP---- 424
+R++ + R + I+ EEA+ K+C++K + HDG+ + DP
Sbjct: 103 YRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQITMHDGKNWLVEIEDPTDPK 162
Query: 425 --LIKVNDSIQLDI------ATTKIMDFIKFESG 502
+ V DS+ L++ + K++D I FE G
Sbjct: 163 EDVYSVGDSLVLELPEPDSGESWKVVDHIPFEEG 196
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 48.0 bits (109), Expect = 2e-04
Identities = 23/82 (28%), Positives = 42/82 (51%)
Frame = +2
Query: 263 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVND 442
+R++ G+ T++ I E K+CKV ++ ++T D R ++ IKV D
Sbjct: 99 YRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLRELKINYAKIKVED 158
Query: 443 SIQLDIATTKIMDFIKFESGNL 508
S+ + +I+ +KFE G+L
Sbjct: 159 SLLIKTINDEIVYALKFEVGSL 180
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 47.2 bits (107), Expect = 4e-04
Identities = 22/54 (40%), Positives = 32/54 (59%)
Frame = +1
Query: 1 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 162
RL AP W L + + RPS GPH + + LPL++ +R+ LKYA E+ K+
Sbjct: 12 RLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKI 65
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 43.2 bits (97), Expect = 0.006
Identities = 21/53 (39%), Positives = 31/53 (58%)
Frame = +1
Query: 4 LNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 162
L AP+ W + + +A +P GPH + LPL++ +RN L YA T E+ KL
Sbjct: 13 LAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKL 65
Score = 36.3 bits (80), Expect = 0.66
Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Frame = +1
Query: 505 LGMITGGRNLGRVGTIVSRERHPG-SFDIVHIKDSTGHTFATRLNNV 642
+ +I GGRN+GRVG + S ++ G +V ++D++G+ F T L+ V
Sbjct: 189 IAIIVGGRNVGRVGVVKSVQKGWGRKRTLVTLEDASGNLFQTSLDYV 235
Score = 35.5 bits (78), Expect = 1.2
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 156 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKT 254
K++ + +VDG VR D +P GFMDV+ + T
Sbjct: 64 KLISEGHFRVDGVVRKDYKFPVGFMDVIEVVDT 96
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 42.7 bits (96), Expect = 0.008
Identities = 18/45 (40%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Frame = +3
Query: 138 DRKR-ILKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTMNCFV 269
D++R I +I+ ++KVDG++ D +P GFMDV+SI+ N ++
Sbjct: 53 DKEREITRILNNNMVKVDGRIVKDRRFPVGFMDVLSIDTLENDYI 97
Score = 36.7 bits (81), Expect = 0.50
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = +2
Query: 269 LIYDVKGRFTIHRITPEEAKYKLCK-VKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDS 445
++YD KG+ I + P KL K VK+ G + L HDG+TI I +D
Sbjct: 98 IVYDRKGKLVIRQNAPGNKGLKLFKVVKKTIIGTGKI-QLGFHDGKTIVTDRKDINTSDV 156
Query: 446 IQLDIATTKIMDFIKFESGNLV 511
+ + I +I + +K G+ V
Sbjct: 157 LLMKIPDLEIENVLKIAEGDKV 178
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 41.5 bits (93), Expect = 0.018
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +1
Query: 1 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES 153
R +P+ W +++ G ++ +PS GPH +PL + LR+ YA T E+
Sbjct: 6 RSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREA 56
Score = 37.1 bits (82), Expect = 0.38
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +3
Query: 159 IVKQRLIKVDGKVRTDPTYPAGFMDVVSI 245
I+ + +KVDGKVR D YP G MDV+ +
Sbjct: 59 IIGKGYVKVDGKVRRDYKYPVGLMDVIEL 87
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 39.1 bits (87), Expect = 0.094
Identities = 24/84 (28%), Positives = 39/84 (46%)
Frame = +2
Query: 257 ELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKV 436
E +R++ D KGR ++++ KLC++ T L +DG I +
Sbjct: 92 EAYRMLQDEKGRLVLYKLNETNVN-KLCRINNKTTVKGGKIQLNLNDGTNILGSNDY-GT 149
Query: 437 NDSIQLDIATTKIMDFIKFESGNL 508
DS+ L I ++ +KFE GNL
Sbjct: 150 KDSLILSIPDKHVVKHLKFEVGNL 173
Score = 35.5 bits (78), Expect = 1.2
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 1 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLK 129
RL+ PK+W + + G + GPH LPL + +R+ LK
Sbjct: 6 RLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLK 48
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 38.7 bits (86), Expect = 0.12
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = +1
Query: 1 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 162
R+ AP AW + + Y S+GPH LP+ I+LR+ +++AL E K+
Sbjct: 6 RMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKI 58
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 37.9 bits (84), Expect = 0.22
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +1
Query: 10 APKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES 153
AP W + + V+ +PS GPH L +P+ I LR+ YA T E+
Sbjct: 17 APPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKTMKEA 64
Score = 37.1 bits (82), Expect = 0.38
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Frame = +2
Query: 263 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI-------RYPD 421
+R++ D + I PEEA YKL +++R T HDGR + Y
Sbjct: 102 YRVVPDPARKLRFVEIKPEEAGYKLAQIRRKMTVKNGDLQFTLHDGRNVLIRKGSEAYST 161
Query: 422 PL-IKVNDSIQLDIATTKIMDFIKFESGNL 508
+ K D++ + I I+ + FE G L
Sbjct: 162 AISYKTYDALLITIPRQSIVSHVPFEVGTL 191
Score = 36.3 bits (80), Expect = 0.66
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +3
Query: 144 KRILKIVKQRLIKVDGKVRTDPTYPAGFMDVVSI 245
K +I+ R+I+VDG+V TD +P G MDV+ I
Sbjct: 62 KEARRILASRVIEVDGRVVTDYKFPVGLMDVLHI 95
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 37.5 bits (83), Expect = 0.29
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Frame = -3
Query: 496 LKLDEVHNLRSCDV*LDGIVDFDKWVWVADGAAIMRYQVRNILRSGRHTLDFTQLVLSLL 317
++LD + +L DV +G+ D + V +GAA+++ R+ L QLVL
Sbjct: 105 VELDRIGDLVRRDVDHNGVTLLDHGIRVTNGAAVVQTDARHALVPELLAPHLAQLVLRFD 164
Query: 316 RGDTVDCESALNIID*TKQFI-VFSIETTSINP 221
D V ES+L ++D + FI +F + S P
Sbjct: 165 SLDAVHNESSLGVVDEPEVFIALFDGDDVSPKP 197
Score = 34.7 bits (76), Expect = 2.0
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = -1
Query: 642 HVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTKFPDSNL 487
HV + R + ++ GVL VHN EG + LA D V + DH + D L
Sbjct: 56 HVRRARRKLLTGGVLQVHNFEGTDVLLAALDHPDATGVVTTGDHAQSADVEL 107
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 36.7 bits (81), Expect = 0.50
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +1
Query: 1 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 135
RL P++W L + ++ +P+ G H C+PL + LR+ L A
Sbjct: 8 RLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLA 52
Score = 36.7 bits (81), Expect = 0.50
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Frame = +2
Query: 263 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD-PLIKVN 439
FR I DV G+ I+ + A KLC+V +T + HDGR I D L
Sbjct: 94 FRCILDVNGKLRYRSISDKAAASKLCRVMGKSTITDGKTQIHLHDGRNILVSDAKLYDSG 153
Query: 440 DSIQLDIATTKIMDFIKFESG 502
D++ + + + F G
Sbjct: 154 DTLVISLPDQSVAGHHPFSKG 174
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 36.3 bits (80), Expect = 0.66
Identities = 26/79 (32%), Positives = 35/79 (44%)
Frame = +2
Query: 275 YDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQL 454
YD KG+ I E KL +VK + HDG T+ IK DS+ +
Sbjct: 97 YDRKGKLVILPKPGETKGLKLLRVKGKTYVKGGRIQISFHDGSTMVTDRKDIKNGDSVLV 156
Query: 455 DIATTKIMDFIKFESGNLV 511
I +I+D +KF GN V
Sbjct: 157 KIPKKEIVDVLKFAPGNRV 175
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 35.5 bits (78), Expect = 1.2
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 1 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRL 126
R++ PK+W + K + GPH + +PL + LR+ L
Sbjct: 7 RISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDML 48
Score = 32.7 bits (71), Expect = 8.2
Identities = 22/82 (26%), Positives = 41/82 (50%)
Frame = +2
Query: 263 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVND 442
+R++ D K R ++++ A KLC+++ + + + +DG I + D
Sbjct: 95 YRVMLDGKSRLVLNKLDGTGAD-KLCRIEGKTSIKEGKIQMRLNDGVNIIGSNNY-NTKD 152
Query: 443 SIQLDIATTKIMDFIKFESGNL 508
SI L + K++ IK+E GNL
Sbjct: 153 SIILSVPDKKVVKHIKYEVGNL 174
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 35.5 bits (78), Expect = 1.2
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +1
Query: 1 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 162
R+ AP+ W + + + +P G H +PLV+ LR+ LK A +E K+
Sbjct: 8 RVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKI 61
Score = 33.1 bits (72), Expect = 6.2
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 126 EVCFDRKRILKIVKQRLIKVDGKVRTDPTYPAGFMDVVSI 245
+V + I KI+ + + VDGKVR D Y G D +SI
Sbjct: 50 KVADNTSEIKKILHEGKVLVDGKVRKDYRYTVGMFDTISI 89
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 35.5 bits (78), Expect = 1.2
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +1
Query: 10 APKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL*NNAS 177
APK W + + +PS G H + L L + +R+ LK A E+ ++ N+ +
Sbjct: 15 APKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKRIINSGN 70
Score = 35.1 bits (77), Expect = 1.5
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 156 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKT 254
+I+ + VDG+V D +P GFMD++ I KT
Sbjct: 64 RIINSGNVLVDGRVIKDYKFPVGFMDIIEIPKT 96
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 35.1 bits (77), Expect = 1.5
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +3
Query: 156 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSI 245
+I+ + VDGKVR D YP G MDVV I
Sbjct: 58 RIIFDGKVLVDGKVRRDYKYPVGLMDVVEI 87
>UniRef50_Q0RWF5 Cluster: Transposase; n=7; Rhodococcus|Rep:
Transposase - Rhodococcus sp. (strain RHA1)
Length = 384
Score = 33.9 bits (74), Expect = 3.5
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +1
Query: 499 WELGMITGGRNLGRVGTIVSRERHPGSFDIVHIKD 603
WE +I G RNL +GT+V ER G+ +VH+ D
Sbjct: 236 WEGDLIVGKRNLSAIGTLV--ERSTGTVMLVHLPD 268
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 33.9 bits (74), Expect = 3.5
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Frame = +2
Query: 263 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVND 442
+R+ DVKG I E AK +LCK++ T L G + D K D
Sbjct: 94 YRIQLDVKGNLVAIEIPAESAKTRLCKIRNKTTVKGGKVQLNFAFGANV-LADNTYKAKD 152
Query: 443 SIQLDIATT-----KIMDFIKFESGNL 508
S+ + + T +I+D + GN+
Sbjct: 153 SVVVTLGTDGEDRFRIVDHFPYAEGNV 179
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 33.5 bits (73), Expect = 4.7
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 4 LNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL*NN 171
L P+ W + K G + +PS GPH +P+ ++LR+ L A E L NN
Sbjct: 12 LAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYLLNN 68
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 32.7 bits (71), Expect = 8.2
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +1
Query: 1 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYA 135
RL+ P +W +++ + + GPH +PL+I LR+ L YA
Sbjct: 7 RLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYA 50
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 758,038,580
Number of Sequences: 1657284
Number of extensions: 16477842
Number of successful extensions: 50000
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 47363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49961
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50826451017
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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