Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00896
(666 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 137 1e-33
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 137 1e-33
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 137 1e-33
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 27 2.4
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 3.2
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 26 4.2
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 5.6
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 25 7.4
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 25 7.4
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 25 9.8
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 25 9.8
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 25 9.8
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 137 bits (332), Expect = 1e-33
Identities = 61/81 (75%), Positives = 71/81 (87%)
Frame = +2
Query: 257 ELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKV 436
E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYPDPLIKV
Sbjct: 97 EHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKV 156
Query: 437 NDSIQLDIATTKIMDFIKFES 499
ND+I+L++ T KI FIKF++
Sbjct: 157 NDTIKLNLETNKIESFIKFDT 177
Score = 87.0 bits (206), Expect = 2e-18
Identities = 36/50 (72%), Positives = 41/50 (82%)
Frame = +1
Query: 1 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 150
R+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 11 RVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Score = 70.9 bits (166), Expect = 2e-13
Identities = 30/44 (68%), Positives = 37/44 (84%)
Frame = +1
Query: 511 MITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNV 642
M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NV
Sbjct: 182 MVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNV 225
Score = 58.8 bits (136), Expect = 7e-10
Identities = 25/37 (67%), Positives = 31/37 (83%)
Frame = +3
Query: 144 KRILKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKT 254
+ + I+ QRLIKVDGKVRTD T+P GFMDV+S+EKT
Sbjct: 59 REVKAILMQRLIKVDGKVRTDSTFPTGFMDVISVEKT 95
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 137 bits (332), Expect = 1e-33
Identities = 61/81 (75%), Positives = 71/81 (87%)
Frame = +2
Query: 257 ELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKV 436
E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYPDPLIKV
Sbjct: 97 EHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKV 156
Query: 437 NDSIQLDIATTKIMDFIKFES 499
ND+I+L++ T KI FIKF++
Sbjct: 157 NDTIKLNLETNKIESFIKFDT 177
Score = 87.0 bits (206), Expect = 2e-18
Identities = 36/50 (72%), Positives = 41/50 (82%)
Frame = +1
Query: 1 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 150
R+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 11 RVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Score = 70.9 bits (166), Expect = 2e-13
Identities = 30/44 (68%), Positives = 37/44 (84%)
Frame = +1
Query: 511 MITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNV 642
M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NV
Sbjct: 182 MVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNV 225
Score = 57.2 bits (132), Expect = 2e-09
Identities = 24/37 (64%), Positives = 31/37 (83%)
Frame = +3
Query: 144 KRILKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKT 254
+ + I+ QRLI+VDGKVRTD T+P GFMDV+S+EKT
Sbjct: 59 REVKAILMQRLIQVDGKVRTDSTFPTGFMDVISVEKT 95
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 137 bits (332), Expect = 1e-33
Identities = 61/81 (75%), Positives = 71/81 (87%)
Frame = +2
Query: 257 ELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKV 436
E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G K VP+LVTHDGRTIRYPDPLIKV
Sbjct: 97 EHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKV 156
Query: 437 NDSIQLDIATTKIMDFIKFES 499
ND+I+L++ T KI FIKF++
Sbjct: 157 NDTIKLNLETNKIESFIKFDT 177
Score = 87.0 bits (206), Expect = 2e-18
Identities = 36/50 (72%), Positives = 41/50 (82%)
Frame = +1
Query: 1 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 150
R+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 11 RVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Score = 70.9 bits (166), Expect = 2e-13
Identities = 30/44 (68%), Positives = 37/44 (84%)
Frame = +1
Query: 511 MITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNV 642
M+TGGRN+GRVGTIV RE H GSF+I+H+KD+ FATRL+NV
Sbjct: 182 MVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNV 225
Score = 57.6 bits (133), Expect = 2e-09
Identities = 24/37 (64%), Positives = 31/37 (83%)
Frame = +3
Query: 144 KRILKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKT 254
+ + I+ QRLIKVDGKVRTD T+P GFMDV+S++KT
Sbjct: 59 REVKAILMQRLIKVDGKVRTDSTFPTGFMDVISVDKT 95
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 639 VVQPRGEGVSRGVLDVHNVEGAGMSLAGHD 550
V+ P EG LD+H+ A ++L GH+
Sbjct: 904 VLHPEHEGAVVEFLDIHDAGKASLALEGHE 933
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 26.6 bits (56), Expect = 3.2
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1
Query: 430 QSQRFHPVRHRNYED 474
++++ HPVRH YED
Sbjct: 5 ENEKIHPVRHSKYED 19
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 4.2
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1
Query: 397 WPHHPLPRPTYQSQR 441
WPHH LP + SQR
Sbjct: 265 WPHHNLPSQFFTSQR 279
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 5.6
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Frame = +3
Query: 105 DFPEESSEVCFDRKRILKIVKQRLIKVDGKV--RTDP--TYPAGFMDVVSIEKTMNCFV* 272
DFP + + + +KR I+K+ L+ VD + R + T P+ +DV N +
Sbjct: 100 DFPSQEAALVRKKKRDALILKKYLLNVDPSLSFRAEGLFTLPSDDLDVYEFFGGENLTLF 159
Query: 273 SMMLRADSQSTVSPLRRLSTSCVKSSVWRPD 365
+ +R D Q + L +L+ C+ S+ + D
Sbjct: 160 N-QVRVDCQCYIHYLPKLAV-CILSNFFLQD 188
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 25.4 bits (53), Expect = 7.4
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +1
Query: 400 PHHPLPRPTYQSQRFHPVRHRNYEDY 477
PH+ P + Q+ HPV+ N+ Y
Sbjct: 265 PHNSFPASADRLQKNHPVQSSNFNPY 290
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 325 SLLRGDTVDCESALNIID*TKQ 260
S RGDT D +ALNI + TK+
Sbjct: 898 STRRGDTDDATTALNIFEETKR 919
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.0 bits (52), Expect = 9.8
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 571 DVSRGTRWCPHAPSYGLP*SYQVPRLKLDEVHNLRSC 461
D+++ TRW P GL +PR D+VH LR C
Sbjct: 1201 DLAQLTRWSP-MDIQGLQ---DIPRPLRDKVHILRDC 1233
>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.0 bits (52), Expect = 9.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 544 GTIVSRERHPGSFDIVHIKDSTGHTFATRLNN 639
G I RE+ P + I H STG T+ N+
Sbjct: 55 GVISYREKFPMDYHIWHTAPSTGKTYLQPWND 86
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 25.0 bits (52), Expect = 9.8
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1
Query: 403 HHPLPRPTYQSQRFHPVR 456
H PLPRP Q + PVR
Sbjct: 720 HKPLPRPPVQVETREPVR 737
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,021,085
Number of Sequences: 5004
Number of extensions: 63776
Number of successful extensions: 181
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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