Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00896
(666 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 124 5e-29
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 121 5e-28
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 120 8e-28
09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078 31 0.82
10_05_0040 - 8463585-8464396,8464664-8465273,8465708-8466169 29 2.5
10_07_0015 + 11813465-11813479,11814342-11814422,11814842-118149... 29 3.3
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 29 4.4
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 5.8
07_01_0172 - 1201595-1201912,1202637-1202723,1202836-1202895,120... 28 7.7
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 124 bits (300), Expect = 5e-29
Identities = 54/85 (63%), Positives = 69/85 (81%)
Frame = +2
Query: 257 ELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKV 436
E FRL+YD KGRF +H I E+AK+KLCKV+ V G K +P+L T+DGRTIRYPDPLIK
Sbjct: 113 ENFRLLYDTKGRFRLHSIKDEDAKFKLCKVRSVQFGQKGIPFLNTNDGRTIRYPDPLIKA 172
Query: 437 NDSIQLDIATTKIMDFIKFESGNLV 511
ND+I++D+ T KI+DFIKF+ GN+V
Sbjct: 173 NDTIKIDLETNKIVDFIKFDVGNIV 197
Score = 90.2 bits (214), Expect = 1e-18
Identities = 38/50 (76%), Positives = 43/50 (86%)
Frame = +1
Query: 1 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 150
RLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT E
Sbjct: 27 RLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYRE 76
Score = 70.5 bits (165), Expect = 1e-12
Identities = 29/49 (59%), Positives = 38/49 (77%)
Frame = +1
Query: 496 VWELGMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNV 642
V + M+TGGRN GRVG I SRE+H GSF+ +H++D+ GH FATR+ NV
Sbjct: 193 VGNIVMVTGGRNTGRVGVIKSREKHKGSFETIHVEDALGHQFATRMGNV 241
Score = 56.8 bits (131), Expect = 1e-08
Identities = 25/37 (67%), Positives = 30/37 (81%)
Frame = +3
Query: 144 KRILKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKT 254
+ ++ I+ QR + VDGKVRTD TYPAGFMDVVSI KT
Sbjct: 75 REVISILMQRHVMVDGKVRTDKTYPAGFMDVVSIAKT 111
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 121 bits (292), Expect = 5e-28
Identities = 52/85 (61%), Positives = 68/85 (80%)
Frame = +2
Query: 257 ELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKV 436
E +RL+YD KGRF + + E+AK+KLCKV+ V G K +PYL T+DGRTIRYPDPLIK
Sbjct: 97 ENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKA 156
Query: 437 NDSIQLDIATTKIMDFIKFESGNLV 511
ND+I++D+ T KI+DFIKF+ GN+V
Sbjct: 157 NDTIKIDLETNKIVDFIKFDVGNVV 181
Score = 91.1 bits (216), Expect = 7e-19
Identities = 38/50 (76%), Positives = 44/50 (88%)
Frame = +1
Query: 1 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 150
RLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 11 RLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Score = 70.1 bits (164), Expect = 1e-12
Identities = 28/44 (63%), Positives = 36/44 (81%)
Frame = +1
Query: 511 MITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNV 642
M+TGGRN GRVG I +RE+H GSF+ +H++D+ GH FATRL NV
Sbjct: 182 MVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHAFATRLGNV 225
Score = 56.0 bits (129), Expect = 3e-08
Identities = 24/37 (64%), Positives = 30/37 (81%)
Frame = +3
Query: 144 KRILKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKT 254
+ ++ I+ QR + VDGKVRTD TYPAGFMDV+SI KT
Sbjct: 59 REVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKT 95
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 120 bits (290), Expect = 8e-28
Identities = 51/85 (60%), Positives = 68/85 (80%)
Frame = +2
Query: 257 ELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKV 436
E +RL+YD KGRF + + E+AK+KLCKV+ V G K +PYL T+DGRTIRYPDP+IK
Sbjct: 97 ENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKA 156
Query: 437 NDSIQLDIATTKIMDFIKFESGNLV 511
ND+I++D+ T KI+DFIKF+ GN+V
Sbjct: 157 NDTIKIDLETNKIVDFIKFDVGNVV 181
Score = 91.1 bits (216), Expect = 7e-19
Identities = 38/50 (76%), Positives = 44/50 (88%)
Frame = +1
Query: 1 RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 150
RLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 11 RLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Score = 69.7 bits (163), Expect = 2e-12
Identities = 28/44 (63%), Positives = 36/44 (81%)
Frame = +1
Query: 511 MITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNV 642
M+TGGRN GRVG I +RE+H GSF+ +H++D+ GH FATRL NV
Sbjct: 182 MVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNV 225
Score = 56.0 bits (129), Expect = 3e-08
Identities = 24/37 (64%), Positives = 30/37 (81%)
Frame = +3
Query: 144 KRILKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKT 254
+ ++ I+ QR + VDGKVRTD TYPAGFMDV+SI KT
Sbjct: 59 REVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKT 95
>09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078
Length = 574
Score = 31.1 bits (67), Expect = 0.82
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 115 SGKSPGASTRATCGDRLTVSVHTHRQVCPTSMLW 14
+G+SPG + RA GD L V+VH T++ W
Sbjct: 50 NGESPGPTIRAAQGDTLVVTVHNMLDTENTAIHW 83
>10_05_0040 - 8463585-8464396,8464664-8465273,8465708-8466169
Length = 627
Score = 29.5 bits (63), Expect = 2.5
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = -1
Query: 663 VPLPIMTHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHTPQVTASRDHTKFPDSNLM 484
V LP + H+V P G G+ G+ ++ ++ G + H + + R+ T D NL
Sbjct: 421 VHLPHLIHLVIPEGTGLPDGIGNLKSLITLRSFDLGENSLH--NIRSIRELTNLKDLNLC 478
Query: 483 KSIIFVVA-MSNWMESL 436
S VV+ M W++ L
Sbjct: 479 YSGKNVVSNMETWIDVL 495
>10_07_0015 +
11813465-11813479,11814342-11814422,11814842-11814951,
11815553-11815608,11816086-11816180,11817021-11817126,
11817261-11817577,11817666-11817848,11817976-11818173,
11819029-11819346,11819721-11819813
Length = 523
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 87 RVLAPGDFPEESSEVCFDRKRILKIVK 167
+VL G P+ESSEV D ILK+++
Sbjct: 468 KVLDEGSSPQESSEVTCDENAILKVME 494
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Frame = +2
Query: 545 APSCPARDI--PAPSTLCTSRTPRDTPSP 625
AP P+ D PAP T T +P TPSP
Sbjct: 70 APDAPSGDFFPPAPPTTTTPTSPGTTPSP 98
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 263 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 367
+ LIYD++G + + P++A L ++ V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>07_01_0172 -
1201595-1201912,1202637-1202723,1202836-1202895,
1203007-1203106,1203227-1203633,1204728-1204883,
1204981-1205106,1205503-1205572,1205679-1205767
Length = 470
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -3
Query: 622 RRCVPWSP*CA--QCRRSRDVSRGTRWCPHAPSY 527
+RC+P S A +CR+SR S+ W P+ S+
Sbjct: 423 QRCLPESLRAAVQRCRQSRPASKVVEWAPYRHSF 456
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,274,405
Number of Sequences: 37544
Number of extensions: 483220
Number of successful extensions: 1483
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1481
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -