Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00896
         (666 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             131   6e-31
SB_11216| Best HMM Match : GILT (HMM E-Value=6.7e-10)                  29   2.6  
SB_3224| Best HMM Match : efhand (HMM E-Value=0.00096)                 29   2.6  
SB_54640| Best HMM Match : TolA (HMM E-Value=1.7)                      29   3.4  
SB_54161| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_56270| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  131 bits (316), Expect = 6e-31
 Identities = 57/84 (67%), Positives = 71/84 (84%)
 Frame = +2

Query: 257 ELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKV 436
           E FRL+YDVKGRF +HRIT EEAKYKL +V+RV  G K VPY+VTHD RTIRYPDP IKV
Sbjct: 521 ENFRLLYDVKGRFAVHRITAEEAKYKLGRVRRVDVGAKGVPYIVTHDARTIRYPDPNIKV 580

Query: 437 NDSIQLDIATTKIMDFIKFESGNL 508
           ND++ +DI T K++D+IKF++GN+
Sbjct: 581 NDTVVIDIKTGKVIDYIKFDTGNM 604



 Score =  101 bits (242), Expect = 5e-22
 Identities = 45/54 (83%), Positives = 48/54 (88%)
 Frame = +1

Query: 1   RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 162
           RLNAPK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G E  K+
Sbjct: 435 RLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEEVKKI 488



 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 30/46 (65%), Positives = 38/46 (82%)
 Frame = +1

Query: 505 LGMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNV 642
           + M+ GGRN+GRVG +  RE+H GSFDIVH+KD+TGH FATRL N+
Sbjct: 604 MAMVVGGRNMGRVGMVTHREKHAGSFDIVHVKDATGHQFATRLTNI 649



 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 29/37 (78%), Positives = 34/37 (91%)
 Frame = +3

Query: 144 KRILKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKT 254
           + + KIVKQRLIK+DGKVRTD TYPAGFMDVV+I+KT
Sbjct: 483 EEVKKIVKQRLIKIDGKVRTDTTYPAGFMDVVTIDKT 519


>SB_11216| Best HMM Match : GILT (HMM E-Value=6.7e-10)
          Length = 311

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = -1

Query: 546 AHTPQVTASRDHTKFPDSNLMKSIIFVVAMSNW 448
           +H+P +T + +H++F     M++++ +V   NW
Sbjct: 168 SHSPWITVNGEHSEFIQQQAMENLLQLVCTVNW 200


>SB_3224| Best HMM Match : efhand (HMM E-Value=0.00096)
          Length = 322

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 568 HPGSFDIVHIKDSTGHTFATRLNNVCHNRQGH 663
           H G   +   K S+ H  ATR    CH  +GH
Sbjct: 12  HKGHLHMSRSKGSSSHLMATRTIFTCHGHKGH 43



 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 547 TIVSRERHPGSFDIVHIKDSTGHTFATRLNNVCHNRQGH 663
           TI +   H G   +   + S+ H  ATR+   CH  +GH
Sbjct: 33  TIFTCHGHKGHLHMSWPQGSSSHVMATRVIFTCHGHKGH 71


>SB_54640| Best HMM Match : TolA (HMM E-Value=1.7)
          Length = 589

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -3

Query: 334 LVLSLLRGDTVDCESALNIID*TKQFIVFSIETTSINPAG*VGSVLTFPS 185
           L   L + + V C SA + ID  + ++VF     ++ P   V S+L FPS
Sbjct: 512 LGFDLAKVEEVVCPSAKSTID-VQNYVVFKQIPVNVQPKNGVKSMLAFPS 560


>SB_54161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 247

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = +1

Query: 499 WELGMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVCHNRQGH 663
           W LG++TG  +L  +  +V R+   G  D +H+ ++T +TF     N+  +R  +
Sbjct: 57  WSLGVVTGVFSL--LFIVVPRK---GRCDQLHVNNATAYTFTGLAANLVRDRSSN 106


>SB_56270| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1207

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 558 GHDGAHTPQVTASRDHTKFPDSNLMKSIIFVVAMSNWMESL 436
           G +  H    +A   HT  P+SN   S  FV+ ++ ++ SL
Sbjct: 872 GREDYHAEDPSARLRHTPVPESNSAWSTSFVIGVAGFLVSL 912


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,096,164
Number of Sequences: 59808
Number of extensions: 537965
Number of successful extensions: 1570
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1567
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)