Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00896
         (666 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   113   8e-26
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    27   1.6  
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z69885-4|CAA93757.1|  208|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    28   5.2  
Z69791-3|CAA93662.1|  924|Caenorhabditis elegans Hypothetical pr...    28   6.8  
U00032-5|AAA50636.2| 1009|Caenorhabditis elegans Yeast isw (imit...    27   9.1  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  113 bits (273), Expect = 8e-26
 Identities = 52/84 (61%), Positives = 62/84 (73%)
 Frame = +2

Query: 257 ELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKV 436
           E FR++YD KGR+ +HRI   EA +KLCKVK V T  K VP L T DGRTIRYPDP +KV
Sbjct: 96  EYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKV 155

Query: 437 NDSIQLDIATTKIMDFIKFESGNL 508
           ND+I  +I+T KI D +KFE GNL
Sbjct: 156 NDTIVFNISTQKITDSVKFEPGNL 179



 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 38/54 (70%), Positives = 43/54 (79%)
 Frame = +1

Query: 1   RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNES*KL 162
           RL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E+ K+
Sbjct: 10  RLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKI 63



 Score = 71.3 bits (167), Expect = 6e-13
 Identities = 31/46 (67%), Positives = 38/46 (82%)
 Frame = +1

Query: 505 LGMITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNV 642
           L  +TGGRN+GRVG I  RER PG+ DI+HIKDS GH+FATR++NV
Sbjct: 179 LAYVTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNV 224



 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 22/37 (59%), Positives = 29/37 (78%)
 Frame = +3

Query: 156 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTMNCF 266
           KI+ QR+++VDGKVRT   +P GFMDVV+IE+T   F
Sbjct: 62  KILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYF 98


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 27.5 bits (58), Expect(2) = 1.6
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = +3

Query: 516 HGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTH 617
           HG    G+ G H     T   L H  H G HGTH
Sbjct: 643 HGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTH 676



 Score = 21.0 bits (42), Expect(2) = 1.6
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 591 AHQGLHGTHLRH 626
           AH G HG H  H
Sbjct: 684 AHHGHHGAHHEH 695


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +2

Query: 287 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 418
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>Z69885-4|CAA93757.1|  208|Caenorhabditis elegans Hypothetical
           protein T04C10.4 protein.
          Length = 208

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 403 HHPLPRPTYQSQRFHPVRHRNYEDYGLH 486
           HH    PTY    F+P  H++Y+ + L+
Sbjct: 32  HHHHQSPTYPQSYFNPYSHQSYQQHHLN 59


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
            family protein 5 protein.
          Length = 938

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -1

Query: 444  ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 280
            E  ++ +  G   V P C   Y     PVA  +  H  Y A + ++R   N P T
Sbjct: 868  EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921


>Z69791-3|CAA93662.1|  924|Caenorhabditis elegans Hypothetical
           protein F39D8.1c protein.
          Length = 924

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -2

Query: 632 NLVAKVCPVESLMCTMSKEPGCLSRDTMVPTRPKLRPPVIIPSSQTQT 489
           N++   C +  L+      PGCLS+      +P  + P  +P+S  QT
Sbjct: 2   NILLNYCNI--LISIKYVSPGCLSQCVNCAPQPIYQSPCCVPTSNVQT 47


>U00032-5|AAA50636.2| 1009|Caenorhabditis elegans Yeast isw (imitation
            swi) homologprotein 1 protein.
          Length = 1009

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 23/106 (21%), Positives = 46/106 (43%), Gaps = 3/106 (2%)
 Frame = +2

Query: 311  TPEEAKYKLCKVKRVATGPKNVPYLVTHDGRT---IRYPDPLIKVNDSIQLDIATTKIMD 481
            T EE ++ +C+  R+    +NV   +    R     R+ D  +K   +++L      ++ 
Sbjct: 904  TEEEDRFLVCETHRLGHDKENVFEELRQSVRMAPQFRF-DWFLKSRTAMELQRRCNTLIT 962

Query: 482  FIKFESGNLV*SREAVTWGVWAPSCPARDIPAPSTLCTSRTPRDTP 619
             I+ E G +V S+  +          A+D+   S   T++  + TP
Sbjct: 963  LIEREMGEVVESKPVIVTAADKKKSVAKDLSKSSGTPTAKKVKATP 1008


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,215,082
Number of Sequences: 27780
Number of extensions: 382315
Number of successful extensions: 1152
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)