Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00896
         (666 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso...   123   9e-29
At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)             123   1e-28
At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai...   123   1e-28
At4g10710.1 68417.m01751 transcriptional regulator-related simil...    31   0.69 
At3g56500.1 68416.m06283 serine-rich protein-related contains so...    27   8.5  

>At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal
           protein S4, Arabidopsis thaliana, PIR:T48480
          Length = 262

 Score =  123 bits (297), Expect = 9e-29
 Identities = 54/85 (63%), Positives = 68/85 (80%)
 Frame = +2

Query: 257 ELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKV 436
           E FRL+YD KGRF +H I  EEAK+KLCKV+ +  G K +PYL T+DGRTIRYPDPLIK 
Sbjct: 97  ENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKP 156

Query: 437 NDSIQLDIATTKIMDFIKFESGNLV 511
           ND+I+LD+   KI++FIKF+ GN+V
Sbjct: 157 NDTIKLDLEANKIVEFIKFDVGNVV 181



 Score = 91.5 bits (217), Expect = 5e-19
 Identities = 39/50 (78%), Positives = 44/50 (88%)
 Frame = +1

Query: 1   RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 150
           RLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  E
Sbjct: 11  RLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60



 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 31/44 (70%), Positives = 37/44 (84%)
 Frame = +1

Query: 511 MITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNV 642
           M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV
Sbjct: 182 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNV 225



 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 27/41 (65%), Positives = 32/41 (78%)
 Frame = +3

Query: 144 KRILKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTMNCF 266
           + ++ I+ QR I+VDGKVRTD TYPAGFMDVVSI KT   F
Sbjct: 59  REVISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENF 99


>At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)
          Length = 262

 Score =  123 bits (296), Expect = 1e-28
 Identities = 54/85 (63%), Positives = 68/85 (80%)
 Frame = +2

Query: 257 ELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKV 436
           E FRL+YD KGRF +H I  EEAK+KLCKV+ +  G K +PYL T+DGRTIRYPDPLIK 
Sbjct: 97  ENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKP 156

Query: 437 NDSIQLDIATTKIMDFIKFESGNLV 511
           ND+I+LD+   KI++FIKF+ GN+V
Sbjct: 157 NDTIKLDLEENKIVEFIKFDVGNVV 181



 Score = 91.5 bits (217), Expect = 5e-19
 Identities = 39/50 (78%), Positives = 44/50 (88%)
 Frame = +1

Query: 1   RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 150
           RLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  E
Sbjct: 11  RLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60



 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 31/44 (70%), Positives = 37/44 (84%)
 Frame = +1

Query: 511 MITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNV 642
           M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV
Sbjct: 182 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNV 225



 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 27/41 (65%), Positives = 32/41 (78%)
 Frame = +3

Query: 144 KRILKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTMNCF 266
           + ++ I+ QR I+VDGKVRTD TYPAGFMDVVSI KT   F
Sbjct: 59  REVISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENF 99


>At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains
           ribosomal protein S4 signature from residues 8 to 22
          Length = 261

 Score =  123 bits (296), Expect = 1e-28
 Identities = 54/85 (63%), Positives = 68/85 (80%)
 Frame = +2

Query: 257 ELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKV 436
           E FRL+YD KGRF +H I  EEAK+KLCKV+ +  G K +PYL T+DGRTIRYPDPLIK 
Sbjct: 97  ENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKP 156

Query: 437 NDSIQLDIATTKIMDFIKFESGNLV 511
           ND+I+LD+   KI++FIKF+ GN+V
Sbjct: 157 NDTIKLDLEENKIVEFIKFDVGNVV 181



 Score = 91.5 bits (217), Expect = 5e-19
 Identities = 39/50 (78%), Positives = 44/50 (88%)
 Frame = +1

Query: 1   RLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 150
           RLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT  E
Sbjct: 11  RLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60



 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 31/44 (70%), Positives = 37/44 (84%)
 Frame = +1

Query: 511 MITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNV 642
           M+TGGRN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV
Sbjct: 182 MVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNV 225



 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 27/41 (65%), Positives = 32/41 (78%)
 Frame = +3

Query: 144 KRILKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTMNCF 266
           + ++ I+ QR I+VDGKVRTD TYPAGFMDVVSI KT   F
Sbjct: 59  REVISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENF 99


>At4g10710.1 68417.m01751 transcriptional regulator-related similar
           to chromatin-specific transcription elongation factor
           FACT 140 kDa subunit (GI:5499741) [Homo sapiens]
          Length = 1074

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 95  KHSRNLWGPVDGLGAYTPPSLSNIHAL 15
           KHS +LWG  D L   TPP+  ++  L
Sbjct: 44  KHSADLWGSADALAIATPPASDDLRYL 70


>At3g56500.1 68416.m06283 serine-rich protein-related contains some
           similarity to serine-rich proteins
          Length = 110

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 505 LGMITGGRNLGRVGTIVSRERHPGSFDI-VHIKDSTGHTFAT 627
           LG+++    LG+   I +  +H GSF   +H   +T H  AT
Sbjct: 51  LGLLSQSNRLGKTVCICAPTKHEGSFRCRLHRSSATSHGAAT 92


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,402,114
Number of Sequences: 28952
Number of extensions: 362441
Number of successful extensions: 1054
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)