Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00895
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    27   2.2  
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.9  
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    26   5.1  
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||...    26   5.1  
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.7  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    25   8.9  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    25   8.9  

>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +2

Query: 56  LKCLAHNNGQVAFTKVIFTR-KFFG 127
           LKC+ H  GQV   KVI  R KF G
Sbjct: 533 LKCIDHKRGQVVAIKVIKNRQKFHG 557


>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 569

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 20/54 (37%), Positives = 25/54 (46%)
 Frame = +1

Query: 238 GS*TVAGLIGHNDVLAKLSPLREKIKQLADAGSKSQPEWFTKVLGLSDKIHYVD 399
           G   VAG IG      + SP RE     +D  ++  P+   K LGLSD   Y D
Sbjct: 166 GQGMVAGSIG-----GEASPSREIPMACSDGLTRYYPQAVVKQLGLSDPPSYAD 214


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 347 PSGSPKF*GYQTKSTTWTD 403
           P G P F  + T++TTW D
Sbjct: 300 PEGRPYFVDHNTRTTTWVD 318


>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 331

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -1

Query: 550 EDRVQDVFLCCCSYLMSSTDAKSEPLS*TLLRQ--SVSGLVQIVNRFDRNIVGPRSGF 383
           E R+QD  + CC + +  T     P+   +L++   V  +V ++ + D   +  R+ F
Sbjct: 134 EKRLQDTRVHCCLFFIRPTGHSLRPIDIAVLKRLTEVVNVVPVIAKSDSLTLEERAAF 191


>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = +1

Query: 289 LSPLREKIKQLADA---GSKSQPEWFTKVLGLSDKIHYVDRQYSD 414
           L PL+E+++++  A   GSK +      V  L++K+   DR YS+
Sbjct: 123 LKPLKERLERIRAAIVEGSKKEDASPVVVKYLNNKLAVCDRNYSE 167


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -2

Query: 639 LKSSILLKDVPFLTTATA*LGVFFSPYTSWKTGCKTYFFAA 517
           L+  + L  VPF +T    L  +F+ +T+W  G + +FFA+
Sbjct: 67  LQYLVALVVVPFYSTIIKKLTPWFTVFTTW-VGEEYFFFAS 106


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 96  PKSYSPGNSSDCPSVPLQLVLQTRTLMNTGISAWTVLKCR*GTR 227
           PKS+ P NSS   SV ++  L   T  +  +S   +L CR   R
Sbjct: 313 PKSWLPKNSSCSLSVDVKATLLETTPPSCEVSYNLLLTCRSSNR 356


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,220,126
Number of Sequences: 5004
Number of extensions: 69406
Number of successful extensions: 225
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)