Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00895
(760 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0131 - 21037698-21038210,21038293-21038532,21038679-210387... 31 0.75
06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-19... 30 2.3
09_06_0204 - 21559024-21559287,21559445-21559567,21559665-215597... 29 4.0
08_02_1505 - 27581466-27581978,27582054-27582293,27582527-275826... 29 5.3
04_04_0179 - 23342764-23342973,23343185-23343340,23343535-233435... 29 5.3
03_01_0560 + 4162206-4162607 28 7.0
10_01_0256 - 2688172-2688786,2690779-2690857,2691567-2691652,269... 28 9.3
03_01_0615 + 4523202-4524518 28 9.3
>09_06_0131 -
21037698-21038210,21038293-21038532,21038679-21038789,
21038872-21038926,21039074-21039210,21039284-21039421,
21040304-21040494,21040625-21040703
Length = 487
Score = 31.5 bits (68), Expect = 0.75
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Frame = +1
Query: 235 LGS*TVAGLIGHNDVLAKLSPLREKIKQLADAGSKSQPEWFTKVLGLSDKIHYVDRQYSD 414
LG T+ L+ N + L EK++ A + F + L KI + +Y+D
Sbjct: 198 LGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTD 257
Query: 415 QSD*LFEQGQK-PTALKAFKTMAPIW 489
+ L + +K PT + F+ W
Sbjct: 258 AKESLLQAARKAPTTARGFRVQCNKW 283
>06_01_0018 +
194295-194640,194679-194917,195737-195885,196248-196342,
196685-196780,197248-197399,198683-198823,199068-199319,
199463-199603,199686-200003,200146-200232,201025-202006,
202091-202179,202968-203072,203155-204306,204844-205359,
205455-205650,206299-207182
Length = 1979
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = -1
Query: 631 FHLIEGCSFFDDSHSVVRSFLFSVYLVEDRVQDVFLCCCSYLMSSTDAKSEPLS 470
+H +G DD V+++ LFS+ ++ D Q + + S +S +AK L+
Sbjct: 394 WHNSDGAICLDDQERVIKTILFSMSILPDVCQPLLIVSTSASLSLWEAKFNRLA 447
>09_06_0204 -
21559024-21559287,21559445-21559567,21559665-21559718,
21559800-21560721,21560803-21561212,21561284-21561408,
21561524-21561571,21561668-21561789,21562008-21562099,
21562242-21562429,21562582-21562696,21562780-21562863,
21562994-21563087,21563393-21563510,21563805-21563930,
21564002-21564074,21564209-21564296,21564674-21564744,
21564839-21564918,21565004-21565065,21565169-21565310,
21565410-21565510,21565600-21565644,21565725-21565789,
21566088-21566163,21566246-21566300,21566416-21566773
Length = 1366
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = -1
Query: 682 STESAVRTVTRFLSS*IFHLIEGCSFFDDSHSVVRSFLFS--VYLVEDRVQDV 530
S++ + + FL+ + EG F DD VV SF+FS V+ +R+ DV
Sbjct: 629 SSQESAKGGAAFLAVCRGKVSEGIDFSDDKARVVVSFVFSSYVFYAPERINDV 681
>08_02_1505 -
27581466-27581978,27582054-27582293,27582527-27582637,
27582732-27582786,27582880-27583016,27583092-27583229,
27583293-27583355,27584379-27584569,27584657-27584732
Length = 507
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Frame = +1
Query: 235 LGS*TVAGLIGHNDVLAKLSPLREKIKQLADAGSKSQPEWFTKVLGLSDKIHYVDRQYSD 414
LG T+ L+ N + L EK++ A + F + L KI + +Y+D
Sbjct: 218 LGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTD 277
Query: 415 QSD*LFEQGQK-PTALKAFKTMAPIW 489
+ L + +K P + F+ W
Sbjct: 278 AKESLLQAARKAPITARGFRIQCNKW 303
>04_04_0179 - 23342764-23342973,23343185-23343340,23343535-23343593,
23344150-23344226,23344309-23344587,23344800-23344885,
23344960-23345027,23345721-23345904,23346071-23346204,
23346776-23347039,23347613-23347677,23347833-23348407,
23348501-23348680,23348765-23348928,23349008-23349261,
23349405-23349562,23349808-23349948,23350176-23350282,
23350651-23350737,23350812-23350901,23350974-23351055,
23351370-23351561,23351748-23351816,23351959-23352294,
23352694-23352837,23352963-23353126,23353817-23353883
Length = 1463
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 116 KFFGLPVGTTPASPSNENPDEYRYLCVDGSKVPIRDKACSWAARPWR 256
K G+P T +PSN NP + + C+ ++ DK W +R +R
Sbjct: 1413 KLLGIPEDTEEGAPSNRNP-PWIWCCLKSYRL---DKNDPWGSRRYR 1455
>03_01_0560 + 4162206-4162607
Length = 133
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 360 GEPLGLAFGTGISQLLYFLP 301
G P G AFG G++ LL+ LP
Sbjct: 20 GAPAGAAFGLGLAGLLFLLP 39
>10_01_0256 -
2688172-2688786,2690779-2690857,2691567-2691652,
2693046-2693113,2695175-2695244,2696191-2696320,
2696924-2697906
Length = 676
Score = 27.9 bits (59), Expect = 9.3
Identities = 19/36 (52%), Positives = 20/36 (55%)
Frame = +3
Query: 132 PSVPLQLVLQTRTLMNTGISAWTVLKCR*GTRPALG 239
PSV Q V T +N G AWTVL CR G R LG
Sbjct: 100 PSVSRQGVPCCHTHVNPG-DAWTVLDCR-GGRVLLG 133
>03_01_0615 + 4523202-4524518
Length = 438
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 24 IPTNSAATWAH*SVWLTTTDKSPSPKSYSPGNSSDCPSVP 143
+ T++ ATWAH S T PS ++P NSS S+P
Sbjct: 96 LDTSADATWAHCSPCGTC----PSSSLFAPANSSSYASLP 131
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,036,705
Number of Sequences: 37544
Number of extensions: 460973
Number of successful extensions: 1296
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1293
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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