Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00895
(760 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12466| Best HMM Match : Transferrin (HMM E-Value=4.4e-21) 47 1e-05
SB_49861| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.58
SB_32319| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_7466| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_51897| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_45447| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_33535| Best HMM Match : RVT_1 (HMM E-Value=1.4013e-45) 28 7.2
SB_57674| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_33092| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
>SB_12466| Best HMM Match : Transferrin (HMM E-Value=4.4e-21)
Length = 291
Score = 47.2 bits (107), Expect = 1e-05
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +2
Query: 506 EVAAAAKKYVLHPVFHEVYGEK-KTPNYAVAVVKKGTSFNKMEDLRGKKSCHSSYGTFSG 682
++ A KY L PV E YG K K +YAVA+V+ T+ N + L+G +CH G
Sbjct: 88 DIYIAGAKYGLRPVVAEDYGSKDKHIHYAVALVRSTTTVN-ITTLKGAITCHPRAEDMIG 146
Query: 683 LDAPLYYLINKRIIKPDQC 739
P+ +LI K++++ C
Sbjct: 147 WKIPVGFLIWKKLMQRKDC 165
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = +2
Query: 20 DYPDEFSGYVGALKCLAHNNGQVAFTKVIFTRKFFGLPVGTTPASPSNENPDEYRYLCVD 199
D + + GY G+ CL G+VAF + ++ G+ P +++ LC D
Sbjct: 210 DESERYYGYNGSYVCLVEGRGEVAFVRHTTVFEYTGVINDLNPGF-------DFKLLCPD 262
Query: 200 GS 205
G+
Sbjct: 263 GT 264
>SB_49861| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 560
Score = 31.9 bits (69), Expect = 0.58
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -1
Query: 589 SVVRSFLFSVYLVEDRVQDVFLCCC 515
SVVR L V L +D+ QD F CCC
Sbjct: 111 SVVRFSLDGVELPQDQTQDSFFCCC 135
>SB_32319| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 551
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Frame = +2
Query: 590 VAVVKKGTSFNKMEDLRGKKSCHSSYGTFSGL-DAPLY-YLINKRIIKPDQ 736
V ++KKG + +K E+ RG S F+ + + LY YL+ ++IIKP+Q
Sbjct: 193 VPILKKGDT-SKPENFRGITLLSSLGKVFTSIMNNRLYNYLVERKIIKPEQ 242
>SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 708
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -3
Query: 362 LVNHSGWLLEPASANCF--IFSLSGLSLARTSLCPISPATV*LPKSRPCPLSA 210
L+ H+ + AS +C +FS GLS+ ++ T L K + CPL++
Sbjct: 415 LMTHTSHEIRQASCSCIHRLFSHGGLSVVEMRTALLAEFTSLLSKQQACPLNS 467
>SB_7466| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 70 SQQRTSRLHQSHIHQEILRIAR 135
++Q + LHQSHIH ++L + R
Sbjct: 64 TKQSVASLHQSHIHHKVLEMVR 85
>SB_51897| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 587
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +2
Query: 533 VLHPVFHEVYGEKKTPNYAVAVVKKGTSFNKMEDLRG 643
V HP H++Y ++ P++ V + +K E RG
Sbjct: 376 VKHPRSHQIYLNRQRPSFTVTIERKANQVVPKETSRG 412
>SB_45447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1200
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +2
Query: 590 VAVVKKGTSFNKMEDLRGKKSCHSSYGTFSGL-DAPLY-YLINKRIIKPDQ 736
V ++KKG +K E+ RG S F+ + + LY YL+ ++IIKP+Q
Sbjct: 896 VPILKKGDP-SKPENFRGITLLSSLGKVFTSIMNNRLYNYLVERKIIKPEQ 945
>SB_33535| Best HMM Match : RVT_1 (HMM E-Value=1.4013e-45)
Length = 469
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +2
Query: 590 VAVVKKGTSFNKMEDLRGKKSCHSSYGTFSGL-DAPLY-YLINKRIIKPDQ 736
V ++KKG +K E+ RG S F+ + + LY YL+ ++IIKP+Q
Sbjct: 193 VPILKKGDP-SKPENFRGITLLSSLGKVFTSIMNNRLYNYLVERKIIKPEQ 242
>SB_57674| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 424
Score = 28.3 bits (60), Expect = 7.2
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Frame = -2
Query: 336 GTGISQLLYFLPQRAKFSQNVVMSDQSRHGLAAQEQALSLIGTLEPSTQRYLYSSGFS-F 160
G G+SQ+ + Q+ + + +S+ L Q+ L + L + + GF+ F
Sbjct: 34 GQGLSQIESEILQQLTAIEELDLSNNKLVKLQLQDVFLPSLTKLNLANNQLATLEGFTAF 93
Query: 159 EGLAGVVPTGNPKNFLVNMTLVKATCPLL 73
L + T NPK + + A CPLL
Sbjct: 94 PNLVDLNITNNPKIEVSEKYKLVAVCPLL 122
>SB_33092| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 131 PVGTTPASPSNENPDEYRYLCVDGSKVPI 217
P G P P+ E+PD++ + G K+P+
Sbjct: 40 PKGDEPNQPNREDPDKWTTILASGYKMPM 68
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,020,270
Number of Sequences: 59808
Number of extensions: 526474
Number of successful extensions: 1446
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1446
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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