Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00895
(760 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF025472-4|AAB71071.1| 209|Caenorhabditis elegans Hypothetical ... 31 0.89
Z75531-4|CAA99805.1| 408|Caenorhabditis elegans Hypothetical pr... 31 1.2
AC024090-5|AAF35427.2| 211|Caenorhabditis elegans Hypothetical ... 31 1.2
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 29 4.7
Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical pr... 28 6.3
AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein. 28 6.3
Z38112-4|CAA86232.1| 809|Caenorhabditis elegans Hypothetical pr... 28 8.3
AL008867-2|CAE17750.1| 763|Caenorhabditis elegans Hypothetical ... 28 8.3
AC006638-10|AAK85488.1| 242|Caenorhabditis elegans Hypothetical... 28 8.3
>AF025472-4|AAB71071.1| 209|Caenorhabditis elegans Hypothetical
protein ZK250.2 protein.
Length = 209
Score = 31.1 bits (67), Expect = 0.89
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 15 DATIPTNSAATWAH*SVWLT-TTDKSPSPKSYSPGNSSDCPSVPLQLVLQTRTLMNTGIS 191
+ PT A T + T + S + PG S++CP + LQ T+ G S
Sbjct: 50 ETAAPTTHAETGMTEEMMTTPVVEVSTVTEKVCPGISAECPDLKLQFYTPVDTIEQDGCS 109
Query: 192 AWTVLKCR*GTRP 230
VLKC G +P
Sbjct: 110 ---VLKCPAGGKP 119
>Z75531-4|CAA99805.1| 408|Caenorhabditis elegans Hypothetical
protein C54D10.4 protein.
Length = 408
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -1
Query: 592 HSVVRSFLFSVYLVEDRVQDVFLCCCSY 509
H V S L + YL+ DRVQ + CCC Y
Sbjct: 263 HLPVTSSLMNQYLIADRVQRRY-CCCGY 289
>AC024090-5|AAF35427.2| 211|Caenorhabditis elegans Hypothetical
protein C52E2.3 protein.
Length = 211
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Frame = +3
Query: 21 TIPTNSAATWAH*SVWLTTTDKSPSPK--------SYSPGNSSDCPSVPLQLVLQTRTLM 176
T+ +AA H +T +P+P PG S++CP + LQ T+
Sbjct: 47 TLAPETAAPTTHAETGMTEEMMTPTPAVELSTVTDKVCPGISAECPDLKLQFYTPVDTIE 106
Query: 177 NTGISAWTVLKCR*GTRP 230
G S VLKC G +P
Sbjct: 107 QDGCS---VLKCPAGGKP 121
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 21 TIPTNSAATWAH*SVWLTTTDKSPSPKSYSPGNSSDCPS 137
T PT++ +T S +TT+ +PS + P +SS PS
Sbjct: 473 TTPTSTESTSTSPSSTVTTSTTAPSTSTTGPSSSSSTPS 511
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 21 TIPTNSAATWAH*SVWLTTTDKSPSPKSYSPGNSSDCPS 137
T PT++ +T S +TT+ +PS + P +SS PS
Sbjct: 473 TTPTSTESTSTSPSSTVTTSTTAPSTSTTGPSSSSSTPS 511
>Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical protein
F09E8.3 protein.
Length = 1369
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +2
Query: 74 NNGQVAFTKVIFTRKFFGLPVGTTPASPSNENPDEYRYLCVDGSKVPIRDKACS 235
+N ++ + +I + FG V TP P +NP E++Y VD +K CS
Sbjct: 1273 SNSSISPSSLILGQLAFG-DVDQTPR-PRGDNPIEFQYDVVDDDDPIFEEKNCS 1324
>AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein.
Length = 1369
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +2
Query: 74 NNGQVAFTKVIFTRKFFGLPVGTTPASPSNENPDEYRYLCVDGSKVPIRDKACS 235
+N ++ + +I + FG V TP P +NP E++Y VD +K CS
Sbjct: 1273 SNSSISPSSLILGQLAFG-DVDQTPR-PRGDNPIEFQYDVVDDDDPIFEEKNCS 1324
>Z38112-4|CAA86232.1| 809|Caenorhabditis elegans Hypothetical
protein E03A3.2 protein.
Length = 809
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +2
Query: 518 AAKKYVLHPVFHEVYGEKKTPNYAVAVVKKGTSFNKMEDLRGK 646
AAKK + + E++ +KKT + AV+ ++K ++ E R K
Sbjct: 33 AAKKPSNYTAWAEIFNKKKTESSAVSAIEKAKKDSEKERQRQK 75
>AL008867-2|CAE17750.1| 763|Caenorhabditis elegans Hypothetical
protein C46E1.3 protein.
Length = 763
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +2
Query: 110 TRKFFGLPVGTTPASPSNENPDEYRY 187
TRK FG V T ASP PDE Y
Sbjct: 109 TRKIFGSSVLTRGASPLPPKPDESHY 134
>AC006638-10|AAK85488.1| 242|Caenorhabditis elegans Hypothetical
protein F41G4.8 protein.
Length = 242
Score = 27.9 bits (59), Expect = 8.3
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Frame = +2
Query: 56 LKCLAHNNGQVAFTKVIFTRKFFGLPV--GTTPASPSNENPDE---YRYL 190
L CLA Q + K FTRK+F + G T +P N E Y+YL
Sbjct: 134 LDCLAFTLLQRIYDKSEFTRKYFARAIHFGLTSTAPMNHRIHEMMVYQYL 183
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,774,790
Number of Sequences: 27780
Number of extensions: 389184
Number of successful extensions: 1087
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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