Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00895
         (760 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g75990.1 68414.m08824 26S proteasome regulatory subunit S3, p...    29   4.4  
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ...    29   4.4  
At1g20200.1 68414.m02524 26S proteasome regulatory subunit S3, p...    29   4.4  
At5g37060.1 68418.m04448 cation/hydrogen exchanger, putative (CH...    28   5.9  

>At1g75990.1 68414.m08824 26S proteasome regulatory subunit S3,
           putative (RPN3) similar to 26S proteasome regulatory
           subunit S3 SP:P93768 [Nicotiana tabacum (Common
           tobacco)]
          Length = 487

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
 Frame = +1

Query: 235 LGS*TVAGLIGHNDVLAKLSPLREKIKQLADAGSKSQPEWFTKVLGLSDKIHYVDRQYSD 414
           LG  T+  L+  N +   L    EK++  A        + F + L    KI  +  +Y+D
Sbjct: 198 LGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTD 257

Query: 415 QSD*LFEQGQK-PTALKAFKTMAPIW 489
             + L +  +K P A   F+     W
Sbjct: 258 AKESLLQAARKAPVASLGFRIQCNKW 283


>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
           XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
           domain PF03159: Putative 5'-3' exonuclease domain
          Length = 947

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +2

Query: 116 KFFGLPVGTTPASPSNENPDEYRYLCVDGS 205
           K F   +GT PA+ SN  P EYR L  D S
Sbjct: 522 KPFDQLMGTLPAASSNALPGEYRKLMTDPS 551


>At1g20200.1 68414.m02524 26S proteasome regulatory subunit S3,
           putative (RPN3) similar to SP:Q06364 from [Daucus
           carota]
          Length = 488

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
 Frame = +1

Query: 235 LGS*TVAGLIGHNDVLAKLSPLREKIKQLADAGSKSQPEWFTKVLGLSDKIHYVDRQYSD 414
           LG  T+  L+  N +   L    EK++  A        + F + L    KI  +  +Y+D
Sbjct: 199 LGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTD 258

Query: 415 QSD*LFEQGQK-PTALKAFKTMAPIW 489
             + L +  +K P A   F+     W
Sbjct: 259 AKESLLQAARKAPIAALGFRIQCNKW 284


>At5g37060.1 68418.m04448 cation/hydrogen exchanger, putative
           (CHX24) similar to Na+/H+-exchanging protein NapA -
           Enterococcus hirae, PIR:A42111; monovalent cation:proton
           antiporter family 2 (CPA2) member, PMID:11500563
          Length = 859

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
 Frame = -3

Query: 389 WILSDSPR-TLVNHSG--WLLEPASANCFIFSLSGLSLA 282
           WI+S +P  TLVN +    +L    A+CF+  + GLS+A
Sbjct: 284 WIVSQTPEGTLVNQNYIVMILMGVLASCFLTDMFGLSIA 322


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,877,774
Number of Sequences: 28952
Number of extensions: 371015
Number of successful extensions: 1041
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)