Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00894
         (739 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    23   3.4  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    22   4.5  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    22   4.5  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    22   5.9  

>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -2

Query: 471 DLSIIHKSSLTIDTV 427
           DLS +HK++LTI+ +
Sbjct: 100 DLSSVHKTTLTIENL 114


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 322 PRTPYENRMYSLKIECGTRYPDEPP 396
           P+   EN  Y   ++CG R   EPP
Sbjct: 65  PKFLTENCDYIHNVDCGDRTQLEPP 89


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 322 PRTPYENRMYSLKIECGTRYPDEPP 396
           P+   EN  Y   ++CG R   EPP
Sbjct: 65  PKFLTENCDYIHNVDCGDRTQLEPP 89


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +1

Query: 316 GPPRTPYENRMYSLKIE 366
           GPPRTP + ++ + K++
Sbjct: 59  GPPRTPLQPKLVAGKLK 75


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,367
Number of Sequences: 336
Number of extensions: 3857
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19779950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)