Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00894
(739 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39170| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 8e-10
SB_35256| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 6e-09
SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37) 44 1e-04
SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39) 38 0.006
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0) 37 0.015
SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06) 36 0.026
SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05) 36 0.045
SB_33407| Best HMM Match : UQ_con (HMM E-Value=0) 36 0.045
SB_33408| Best HMM Match : UQ_con (HMM E-Value=3.7e-07) 35 0.060
SB_15708| Best HMM Match : UQ_con (HMM E-Value=0) 34 0.10
SB_5638| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_24529| Best HMM Match : Lectin_C (HMM E-Value=3.4e-27) 32 0.42
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_22456| Best HMM Match : LRR_1 (HMM E-Value=1.4e-11) 29 5.2
SB_30411| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_20896| Best HMM Match : TSP_1 (HMM E-Value=4.8e-28) 29 5.2
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 23 6.3
SB_46386| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_23434| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
>SB_39170| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 79
Score = 61.3 bits (142), Expect = 8e-10
Identities = 26/50 (52%), Positives = 38/50 (76%)
Frame = +1
Query: 328 TPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNSQTGLVDNRQVPI 477
T +ENR+Y+LKI CG YP +PPT +F+S+I+MN VNS+ G D+R+ +
Sbjct: 1 TVFENRIYNLKIVCGPNYPQKPPTVKFVSKINMNGVNSK-GETDDREAEL 49
>SB_35256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 41
Score = 58.4 bits (135), Expect = 6e-09
Identities = 23/39 (58%), Positives = 32/39 (82%)
Frame = +1
Query: 328 TPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNSQ 444
T +ENR+Y+LKI CG YP +PPT +F+S+I+MN VNS+
Sbjct: 1 TVFENRIYNLKIVCGPNYPQKPPTVKFVSKINMNGVNSK 39
>SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 473
Score = 44.4 bits (100), Expect = 1e-04
Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +1
Query: 277 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRI-HMN 429
DD L W M++GPP T YE + + YP PPT FIS I H N
Sbjct: 358 DDEDLYKWEIMVVGPPGTYYEEGYFKASMVFPKEYPQRPPTLTFISDIWHPN 409
>SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37)
Length = 190
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 310 IIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRI-HMNCVNSQTGLVDNRQVPILAR 486
+IG TPY ++ L I+ RYP EPP RF++ I H N +S +D ++P
Sbjct: 2 LIGAEGTPYHKGIFKLDIQIPERYPFEPPKVRFVTPIYHPNIDSSGRICLDTLKMPPKGM 61
Query: 487 WQ 492
W+
Sbjct: 62 WK 63
>SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39)
Length = 841
Score = 38.3 bits (85), Expect = 0.006
Identities = 18/39 (46%), Positives = 20/39 (51%)
Frame = +1
Query: 280 DMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPP 396
D T T G I GPP TP+E Y+L I YP PP
Sbjct: 683 DETFTKLKGEIRGPPETPFEGGTYNLDIVIPETYPFNPP 721
>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 1282
Score = 37.1 bits (82), Expect = 0.015
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +1
Query: 265 LESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRI-HMNCVNS 441
+E D+ W I GPP T Y + + YP PPT RF++++ H N S
Sbjct: 1146 VEVPDESNTFEWDVAIFGPPGTLYAGGYFKAHMSFPHDYPYSPPTFRFLTKMWHPNIYES 1205
>SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06)
Length = 739
Score = 36.3 bits (80), Expect = 0.026
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 307 MIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFIS 414
MI GP TPY++ +++ I YPD PP+ ++S
Sbjct: 639 MIEGPAGTPYDHGLFAFDILLPANYPDAPPSFHYLS 674
>SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05)
Length = 200
Score = 35.5 bits (78), Expect = 0.045
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = +1
Query: 250 NHSWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPP 396
N S G + DD L W I+GPP + YE ++ L I + YP +PP
Sbjct: 154 NCSAGPKGDD---LYEWYSTILGPPGSVYEGGVFFLDIHFPSDYPFKPP 199
>SB_33407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 226
Score = 35.5 bits (78), Expect = 0.045
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = +1
Query: 250 NHSWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPP 396
N S G + DD L W I+GPP + YE ++ L I + YP +PP
Sbjct: 114 NCSAGPKGDD---LYEWYSTILGPPGSVYEGGVFFLDIHFPSDYPFKPP 159
>SB_33408| Best HMM Match : UQ_con (HMM E-Value=3.7e-07)
Length = 181
Score = 35.1 bits (77), Expect = 0.060
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 289 LTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPP 396
L W I+GPP + YE ++ L I T YP +PP
Sbjct: 51 LYEWYSTILGPPGSVYEGGVFFLDIHFPTDYPFKPP 86
>SB_15708| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 145
Score = 34.3 bits (75), Expect = 0.10
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +1
Query: 277 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIH 423
D+ + +W G+I+ P PY + ++I YP +PP F ++I+
Sbjct: 19 DESNILYWQGLIV-PEMPPYNKGAFRIEICFPAEYPFKPPKITFKTKIY 66
>SB_5638| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 33.5 bits (73), Expect = 0.18
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +1
Query: 277 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFIS 414
DD+ H +I GP TPYE + I C YP PP + ++
Sbjct: 8 DDIPKIH--ALITGPFDTPYEGGFFYFLIRCPPDYPIRPPRVKLMT 51
>SB_24529| Best HMM Match : Lectin_C (HMM E-Value=3.4e-27)
Length = 644
Score = 32.3 bits (70), Expect = 0.42
Identities = 30/110 (27%), Positives = 44/110 (40%), Gaps = 10/110 (9%)
Frame = -2
Query: 441 TIDTVHMNPRNKAGCWWLIRVSCSTF--------NFKGVHSILVGCPWWA-NNHSSPMSK 289
T+ H + A W+ VS S F NF GVH + W A +N P+ K
Sbjct: 137 TVHHTHRRVKRDAAMAWVEDVSASGFDLCLRELQNFDGVHQDIT-ASWMAFDNLHRPLFK 195
Query: 288 SHIIIAFKTPRMVPSPTPFWPCSS-SSKRRKFRGTTTPDDGFAMITVSPA 142
H +I F + P + C +S K D G++ +TV+ A
Sbjct: 196 EHGLIHFSNRQPPPKRVNYAFCKQVNSTGAKICVKQVYDSGYSPLTVNYA 245
>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6863
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 507 DGIVTLPSSKNWDLSIIHKSSLTIDTVHMNPRNKAGC 397
+ + L SS+N +++HK T+D + RN GC
Sbjct: 3867 ESVTALESSENAVATLMHKIDGTLDNLSDEDRNSIGC 3903
>SB_22456| Best HMM Match : LRR_1 (HMM E-Value=1.4e-11)
Length = 459
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 232 KGSGRWNHSWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIEC 369
K S R H W SDD + + T + +T ++ +YSL+ C
Sbjct: 37 KSSARVCHLWAKASDDPLLWKNTTATLYTKSKTFPDSLIYSLQCRC 82
>SB_30411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 710
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 316 GPPRTPYENRMYSLKIECGTRYPDEPPT-ARFISRIHMNCV 435
GP TPYE ++ ++++ +YP + P+ A F I + CV
Sbjct: 56 GPVGTPYEGGVWKVRVDLPEKYPFKSPSIANFTIEISV-CV 95
>SB_20896| Best HMM Match : TSP_1 (HMM E-Value=4.8e-28)
Length = 588
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -2
Query: 333 GCPWWANNHSSPMSKSHIIIAFKTPRMVPSPTPF-WPCSSSSK 208
G + NNH SP+ + + +K P ++ P F W S S+
Sbjct: 173 GITEFGNNHISPLDAKIVNLMYKCPELIQFPRDFYWRHSGRSR 215
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 23.4 bits (48), Expect(2) = 6.3
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = -2
Query: 489 PSSKNWDLSIIHKSSLTIDTVHMNPRNKAGCWWLI 385
PSS+ L + H ++T N+ GC W++
Sbjct: 28 PSSQRDYLFVSHIGNVTPSEEGQRLENEVGCAWMV 62
Score = 23.4 bits (48), Expect(2) = 6.3
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Frame = -2
Query: 336 VGCPWWANNHSSPMSKSHIIIAFKTPRMVP---SPTPFWP 226
VGC W NN S + +++ K P SP P +P
Sbjct: 56 VGCAWMVNNWSVEHPDAPCLVSAKCGGHPPTNFSPNPPYP 95
>SB_46386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 849
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -2
Query: 492 LPSSKNWDLSIIHKSSLTIDTVHM-NPRNKAGCWWLI 385
LPS+K W +I H SL V + +P N WW +
Sbjct: 789 LPSTKGWKNAIRHTLSLRQRFVRLPDPGNPYRSWWTV 825
>SB_23434| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 164
Score = 27.9 bits (59), Expect = 9.1
Identities = 8/29 (27%), Positives = 15/29 (51%)
Frame = -2
Query: 408 KAGCWWLIRVSCSTFNFKGVHSILVGCPW 322
+ GC W++ C ++ ++VGC W
Sbjct: 20 ECGCGWVVAAECGCGGCGQLNVVVVGCGW 48
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,176,836
Number of Sequences: 59808
Number of extensions: 449954
Number of successful extensions: 1008
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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