Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00894
         (739 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    24   5.6  
U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.         23   7.4  
U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.         23   7.4  
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    23   7.4  
AJ618928-1|CAF02007.1|  285|Anopheles gambiae odorant-binding pr...    23   9.8  

>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 19/77 (24%), Positives = 31/77 (40%)
 Frame = -2

Query: 315 NNHSSPMSKSHIIIAFKTPRMVPSPTPFWPCSSSSKRRKFRGTTTPDDGFAMITVSPA*R 136
           N+H+SPMS  +  +       VP+P      +++S      G   P+  F     +    
Sbjct: 460 NHHNSPMSPINFNLLSAASTAVPNPAA-TNATANSTTTGAGGLLDPNSNFHKSLAAANTN 518

Query: 135 TVKT*INSVKLYCIGAT 85
             KT   ++ L   GAT
Sbjct: 519 DSKTGTGNLLLKTAGAT 535


>U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 23.4 bits (48), Expect = 7.4
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = -2

Query: 318 ANNHSSPMSKSHIIIAFKTPRMVPSPTPFWPCSSSSKRRKFRGTTTPDD 172
           A N +S         A  TP+ +P P P    + SS +   RG  + DD
Sbjct: 400 ATNGASNGGSGAPATAKPTPKPIPKPAPSSETNGSSSQE--RGMESSDD 446


>U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 23.4 bits (48), Expect = 7.4
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = -2

Query: 318 ANNHSSPMSKSHIIIAFKTPRMVPSPTPFWPCSSSSKRRKFRGTTTPDD 172
           A N +S         A  TP+ +P P P    + SS +   RG  + DD
Sbjct: 400 ATNGASNGGSGAPATAKPTPKPIPKPAPSSETNGSSSQE--RGMESSDD 446


>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
            gambiae RT2 retroposon. ).
          Length = 1222

 Score = 23.4 bits (48), Expect = 7.4
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = -2

Query: 312  NHSSPMSKSHIIIAFKTPRMVPSPTPFWPCSSSSKRRKFRGTTTPDDGFAMITVSPA*RT 133
            NHS P +    ++A+    ++    P W  + +++ R+ R         A I V+ A RT
Sbjct: 827  NHSGPRTAKSRLLAYVAESVLRYAAPVW--AEATQVRECRRMLQRVQRKAAIRVARAFRT 884

Query: 132  VK 127
            V+
Sbjct: 885  VR 886


>AJ618928-1|CAF02007.1|  285|Anopheles gambiae odorant-binding
           protein OBPjj83a protein.
          Length = 285

 Score = 23.0 bits (47), Expect = 9.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 412 SRIHMNCVNSQTGLVDNRQVPILA 483
           +R  + CV  +TGL D+ Q P +A
Sbjct: 199 TRSLIRCVGIRTGLYDDEQGPNIA 222


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 770,547
Number of Sequences: 2352
Number of extensions: 14941
Number of successful extensions: 29
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 75676146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)