Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00894
(739 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical pr... 127 9e-30
AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin co... 50 1e-06
Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical pr... 50 2e-06
S56051-1|AAB25489.2| 147|Caenorhabditis elegans ubiquitin-conju... 50 2e-06
U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein. 49 3e-06
AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin con... 49 3e-06
Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical p... 44 1e-04
U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin conju... 41 0.001
AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin co... 38 0.006
AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin con... 35 0.069
U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin conju... 34 0.091
AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin con... 34 0.091
U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin conju... 33 0.21
AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical... 32 0.49
AF040645-12|AAB94978.2| 78|Caenorhabditis elegans Hypothetical... 32 0.49
AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin co... 32 0.49
U39674-4|AAA80414.2| 182|Caenorhabditis elegans Ubiquitin conju... 31 0.64
U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin conju... 31 0.64
Z27079-11|CAC42341.1| 115|Caenorhabditis elegans Hypothetical p... 30 1.5
AF009907-1|AAB63300.1| 101|Caenorhabditis elegans paraquat-indu... 30 1.5
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 29 4.5
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 29 4.5
U28738-2|AAA68309.4| 982|Caenorhabditis elegans Hypothetical pr... 28 7.9
>Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical
protein F39B2.2 protein.
Length = 139
Score = 127 bits (306), Expect = 9e-30
Identities = 53/93 (56%), Positives = 64/93 (68%)
Frame = +1
Query: 232 KGSGRWNHSWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFI 411
KG G N SWGLE D DMTLT WT IIGPPRTPYE+R+Y+L+I+CG YP EPPT RF
Sbjct: 19 KGKGDGNISWGLEDDSDMTLTRWTASIIGPPRTPYESRIYNLQIQCGGNYPREPPTVRFT 78
Query: 412 SRIHMNCVNSQTGLVDNRQVPILARWQRDYTIK 510
+++HM VN G++D R + L W Y IK
Sbjct: 79 TKVHMVGVNQSNGVIDKRNLTTLRNWSNSYMIK 111
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = +2
Query: 182 VVVPRNFRLLEELEQGQKGVGDGTI 256
V VPRNFRLLEELE+GQKG GDG I
Sbjct: 2 VDVPRNFRLLEELEEGQKGKGDGNI 26
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/29 (48%), Positives = 23/29 (79%), Gaps = 1/29 (3%)
Frame = +3
Query: 507 QTVLQEVRR-LMTLKDNMKLSQPPEGSTF 590
+TVL+++R+ +M K+N+KL QP EG+ F
Sbjct: 111 KTVLEDIRKNMMMAKENLKLQQPAEGAMF 139
>AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein20 protein.
Length = 199
Score = 50.4 bits (115), Expect = 1e-06
Identities = 24/56 (42%), Positives = 33/56 (58%)
Frame = +1
Query: 289 LTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNSQTGLV 456
LT G I GPP TPY M+ L I+ +YP PP +F ++I V+SQTG++
Sbjct: 36 LTEIKGHIRGPPDTPYAGGMFDLDIKIPDQYPFSPPNVKFSTKIWHPNVSSQTGVI 91
>Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical
protein M7.1 protein.
Length = 147
Score = 50.0 bits (114), Expect = 2e-06
Identities = 21/51 (41%), Positives = 30/51 (58%)
Frame = +1
Query: 289 LTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNS 441
L HW I+GPP +PY+ ++ L I T YP +PP F +RI+ +NS
Sbjct: 30 LFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 80
>S56051-1|AAB25489.2| 147|Caenorhabditis elegans
ubiquitin-conjugating enzyme protein.
Length = 147
Score = 50.0 bits (114), Expect = 2e-06
Identities = 21/51 (41%), Positives = 30/51 (58%)
Frame = +1
Query: 289 LTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNS 441
L HW I+GPP +PY+ ++ L I T YP +PP F +RI+ +NS
Sbjct: 30 LFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS 80
>U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein.
Length = 192
Score = 49.2 bits (112), Expect = 3e-06
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Frame = +1
Query: 277 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRI-HMN 429
+D LT W +I GP TP+E+ + L +E YP++PPT +FIS++ H N
Sbjct: 30 EDNILT-WEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPN 80
>AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein1 protein.
Length = 192
Score = 49.2 bits (112), Expect = 3e-06
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Frame = +1
Query: 277 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRI-HMN 429
+D LT W +I GP TP+E+ + L +E YP++PPT +FIS++ H N
Sbjct: 30 EDNILT-WEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPN 80
>Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical
protein F58A4.10 protein.
Length = 164
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +1
Query: 277 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRI-HMN 429
DD + W ++IGPP T YE + ++ YP +PP +FIS I H N
Sbjct: 29 DDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPN 80
>U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein23 protein.
Length = 546
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = +1
Query: 304 GMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNSQTGLV 456
G+I G TPYE ++ L I+ G YP + PT +FI++I V+ G +
Sbjct: 383 GIIKGVEETPYEGGIFELDIKIGESYPFKAPTVKFITKIWHPSVSPFDGTI 433
>AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein3 protein.
Length = 243
Score = 38.3 bits (85), Expect = 0.006
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 298 WTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRI-HMN 429
WT I GPP+T Y+ + I + YP PP+ +F +++ H N
Sbjct: 42 WTVGIYGPPKTLYQGGYFKASIRFPSNYPYSPPSMKFTTKVWHPN 86
>AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein26 protein.
Length = 203
Score = 34.7 bits (76), Expect = 0.069
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 280 DMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPP 396
+ + W +IIG P+TPYE +Y K+ +P +PP
Sbjct: 34 ETNILEWRYIIIGAPKTPYEGGIYMGKLLFPKDFPFKPP 72
>U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein21 protein.
Length = 229
Score = 34.3 bits (75), Expect = 0.091
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 15/66 (22%)
Frame = +1
Query: 304 GMIIGPPRTPYENRMYSLKIECGTRYPDEPP---------------TARFISRIHMNCVN 438
G I GP TPY + +K++ YP EPP A+F++RI ++
Sbjct: 55 GFIKGPEGTPYAGGTFEIKVDIPEHYPFEPPKVTEIIFHIRAFEYIQAKFVTRIWHPNIS 114
Query: 439 SQTGLV 456
SQTG +
Sbjct: 115 SQTGTI 120
>AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein8 protein.
Length = 221
Score = 34.3 bits (75), Expect = 0.091
Identities = 13/47 (27%), Positives = 28/47 (59%)
Frame = +1
Query: 316 GPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNSQTGLV 456
GP T YEN ++ ++++ +YP + P+ F+++I ++ +G V
Sbjct: 41 GPKDTAYENGVWRIRVDMPDKYPFKSPSIGFLNKIFHPNIDEASGTV 87
>U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein17 protein.
Length = 679
Score = 33.1 bits (72), Expect = 0.21
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 307 MIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFIS 414
+I GP TPY N ++ I T YP PP F++
Sbjct: 448 LISGPDDTPYANGLFEFDIFFPTGYPFSPPKCAFLT 483
>AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical
protein Y87G2A.9 protein.
Length = 170
Score = 31.9 bits (69), Expect = 0.49
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +1
Query: 277 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRI-HMN 429
D+ W +I GP T + N ++ +I YP PP RF I H N
Sbjct: 30 DEDNFFEWECLITGPEETCFANGVFPARITFPQDYPLSPPKMRFTCGIFHPN 81
>AF040645-12|AAB94978.2| 78|Caenorhabditis elegans Hypothetical
protein F52C6.12 protein.
Length = 78
Score = 31.9 bits (69), Expect = 0.49
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 256 SWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKI 363
S G DD L HW I+GPP +PY+ ++ L I
Sbjct: 22 STGSVGDD---LYHWQATIMGPPESPYQGGIFFLTI 54
>AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein13 protein.
Length = 151
Score = 31.9 bits (69), Expect = 0.49
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +1
Query: 277 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIH 423
D+ ++ MI GP +P+ ++ L++ YP P RF+++I+
Sbjct: 29 DESNARYFHVMIAGPDDSPFAGGVFKLELFLPEEYPMAAPKVRFMTKIY 77
>U39674-4|AAA80414.2| 182|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein22 protein.
Length = 182
Score = 31.5 bits (68), Expect = 0.64
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +1
Query: 310 IIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNSQTGLV 456
I GP TPYE ++ + + YP+ P +F + I V TG V
Sbjct: 35 IAGPADTPYETGVFEVDLTFPDNYPNALPQIKFQTLIWNCAVEPSTGQV 83
>U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein18 protein.
Length = 153
Score = 31.5 bits (68), Expect = 0.64
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +1
Query: 277 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIH 423
++ L WT ++I P + PY + + I YP +PP F ++I+
Sbjct: 28 EETNLLKWTVLLI-PDKEPYNKGAFKVGITFPVDYPFKPPKVAFETKIY 75
>Z27079-11|CAC42341.1| 115|Caenorhabditis elegans Hypothetical
protein T05G5.11 protein.
Length = 115
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -3
Query: 587 SASLWWLRKLHVIFKSHETSHFLKNCLMV*SRCHL 483
S LW++ K H ++ SH T++F N + + CHL
Sbjct: 79 SGLLWYINKAHELYASHLTANFGNN-IYILVLCHL 112
>AF009907-1|AAB63300.1| 101|Caenorhabditis elegans
paraquat-inducible protein protein.
Length = 101
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -3
Query: 587 SASLWWLRKLHVIFKSHETSHFLKNCLMV*SRCHL 483
S LW++ K H ++ SH T++F N + + CHL
Sbjct: 65 SGLLWYINKAHELYASHLTANFGNN-IYILVLCHL 98
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/56 (23%), Positives = 26/56 (46%)
Frame = +1
Query: 268 ESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCV 435
+ D++ L G PR +N+++ KI+C + + + P F+ R C+
Sbjct: 56 DGSDEVCLPWQFDCQFGSPRCISKNKLHDKKIDCYSGFDEGCPAHYFVCRDRSACI 111
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/56 (23%), Positives = 26/56 (46%)
Frame = +1
Query: 268 ESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCV 435
+ D++ L G PR +N+++ KI+C + + + P F+ R C+
Sbjct: 56 DGSDEVCLPWQFDCQFGSPRCISKNKLHDKKIDCYSGFDEGCPAHYFVCRDRSACI 111
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane
cell adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/56 (23%), Positives = 26/56 (46%)
Frame = +1
Query: 268 ESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCV 435
+ D++ L G PR +N+++ KI+C + + + P F+ R C+
Sbjct: 56 DGSDEVCLPWQFDCQFGSPRCISKNKLHDKKIDCYSGFDEGCPAHYFVCRDRSACI 111
>U28738-2|AAA68309.4| 982|Caenorhabditis elegans Hypothetical
protein T28D9.7 protein.
Length = 982
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/57 (29%), Positives = 22/57 (38%)
Frame = -2
Query: 480 KNWDLSIIHKSSLTIDTVHMNPRNKAGCWWLIRVSCSTFNFKGVHSILVGCPWWANN 310
K+WD+ + H R GC W SC +FK V + C WA N
Sbjct: 188 KSWDMDAV---KFLRSAAHWKSRMILGCTWPNGTSCKLSDFKAVWTTTGLC--WAIN 239
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,556,353
Number of Sequences: 27780
Number of extensions: 344582
Number of successful extensions: 736
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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