Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00894
(739 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g23260.1 68414.m02910 ubiquitin-conjugating enzyme family pro... 109 2e-24
At2g36060.1 68415.m04427 ubiquitin-conjugating enzyme family pro... 108 3e-24
At3g52560.1 68416.m05784 ubiquitin-conjugating enzyme family pro... 107 8e-24
At2g36060.2 68415.m04428 ubiquitin-conjugating enzyme family pro... 104 7e-23
At1g70660.1 68414.m08146 ubiquitin-conjugating enzyme family pro... 104 7e-23
At3g52560.2 68416.m05785 ubiquitin-conjugating enzyme family pro... 103 2e-22
At5g25760.1 68418.m03057 ubiquitin-conjugating enzyme, putative ... 51 9e-07
At5g62540.1 68418.m07849 ubiquitin-conjugating enzyme 3 (UBC3) E... 48 9e-06
At2g02760.1 68415.m00219 ubiquitin-conjugating enzyme 2 (UBC2) E... 48 9e-06
At1g14400.2 68414.m01708 ubiquitin-conjugating enzyme 1 (UBC1) E... 48 9e-06
At1g14400.1 68414.m01707 ubiquitin-conjugating enzyme 1 (UBC1) E... 48 9e-06
At3g24515.1 68416.m03077 ubiquitin-conjugating enzyme, putative ... 46 3e-05
At1g36340.1 68414.m04516 ubiquitin-conjugating enzyme family pro... 46 3e-05
At5g50870.1 68418.m06304 ubiquitin-conjugating enzyme, putative ... 44 8e-05
At5g59300.1 68418.m07430 ubiquitin-conjugating enzyme 7 (UBC7) E... 44 1e-04
At3g46460.1 68416.m05037 ubiquitin-conjugating enzyme 13 (UBC13)... 43 2e-04
At3g13550.1 68416.m01703 ubiquitin-conjugating enzyme (COP10) id... 43 2e-04
At3g08690.1 68416.m01010 ubiquitin-conjugating enzyme 11 (UBC11)... 42 3e-04
At3g08700.1 68416.m01011 ubiquitin-conjugating enzyme, putative ... 42 4e-04
At1g78870.2 68414.m09194 ubiquitin-conjugating enzyme, putative ... 39 0.003
At1g78870.1 68414.m09193 ubiquitin-conjugating enzyme, putative ... 39 0.003
At1g16890.2 68414.m02044 ubiquitin-conjugating enzyme, putative ... 39 0.003
At3g55380.1 68416.m06151 ubiquitin-conjugating enzyme 14 (UBC14)... 38 0.005
At5g41700.4 68418.m05071 ubiquitin-conjugating enzyme 8 (UBC8) E... 38 0.007
At5g41700.3 68418.m05068 ubiquitin-conjugating enzyme 8 (UBC8) E... 38 0.007
At5g41700.2 68418.m05070 ubiquitin-conjugating enzyme 8 (UBC8) E... 38 0.007
At5g41700.1 68418.m05069 ubiquitin-conjugating enzyme 8 (UBC8) E... 38 0.007
At1g16890.1 68414.m02043 ubiquitin-conjugating enzyme, putative ... 38 0.007
At5g53300.2 68418.m06625 ubiquitin-conjugating enzyme 10 (UBC10)... 38 0.009
At5g53300.1 68418.m06624 ubiquitin-conjugating enzyme 10 (UBC10)... 38 0.009
At1g64230.1 68414.m07276 ubiquitin-conjugating enzyme, putative ... 38 0.009
At4g27960.2 68417.m04012 ubiquitin-conjugating enzyme E2-17 kDa ... 37 0.012
At4g27960.1 68417.m04011 ubiquitin-conjugating enzyme E2-17 kDa ... 37 0.012
At2g16740.1 68415.m01920 ubiquitin-conjugating enzyme, putative ... 37 0.012
At1g45050.1 68414.m05165 ubiquitin-conjugating enzyme 15 (UBC15)... 37 0.012
At5g05080.1 68418.m00539 ubiquitin-conjugating enzyme, putative ... 37 0.016
At2g32790.1 68415.m04014 ubiquitin-conjugating enzyme, putative ... 36 0.021
At5g42990.1 68418.m05243 ubiquitin-conjugating enzyme 18 (UBC18)... 34 0.086
At5g56150.2 68418.m07005 ubiquitin-conjugating enzyme, putative ... 34 0.11
At5g56150.1 68418.m07004 ubiquitin-conjugating enzyme, putative ... 34 0.11
At2g46030.1 68415.m05726 ubiquitin-conjugating enzyme 6 (UBC6) E... 33 0.15
At1g75440.1 68414.m08763 ubiquitin-conjugating enzyme 16 (UBC16)... 33 0.15
At1g63800.1 68414.m07220 ubiquitin-conjugating enzyme 5 (UBC5) E... 33 0.26
At1g50490.1 68414.m05662 ubiquitin-conjugating enzyme 20 (UBC20)... 33 0.26
At2g33770.1 68415.m04141 ubiquitin-conjugating enzyme family pro... 32 0.46
At4g36410.1 68417.m05173 ubiquitin-conjugating enzyme 17 (UBC17)... 31 0.60
At5g41340.1 68418.m05024 ubiquitin-conjugating enzyme 4 (UBC4) E... 31 1.1
At3g20060.1 68416.m02537 ubiquitin-conjugating enzyme 19 (UBC19)... 30 1.4
At1g53020.1 68414.m06002 ubiquitin-conjugating enzyme family pro... 30 1.8
At1g55915.1 68414.m06413 expressed protein similar to Hypothetic... 29 2.4
At3g17000.1 68416.m02171 ubiquitin-conjugating enzyme, putative ... 28 5.6
At5g16590.1 68418.m01942 leucine-rich repeat transmembrane prote... 28 7.4
At3g57870.1 68416.m06451 ubiquitin-conjugating enzyme, putative ... 28 7.4
At3g15355.1 68416.m01945 ubiquitin-conjugating enzyme-related si... 28 7.4
At5g56890.1 68418.m07099 protein kinase family protein contains ... 27 9.8
At5g08200.1 68418.m00959 peptidoglycan-binding LysM domain-conta... 27 9.8
At2g47310.1 68415.m05906 flowering time control protein-related ... 27 9.8
At2g16920.1 68415.m01949 ubiquitin-conjugating enzyme family pro... 27 9.8
>At1g23260.1 68414.m02910 ubiquitin-conjugating enzyme family
protein similar to TRAF6-regulated IKK activator 1 beta
Uev1A [Homo sapiens] GI:10880969; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 158
Score = 109 bits (261), Expect = 2e-24
Identities = 44/98 (44%), Positives = 65/98 (66%)
Frame = +1
Query: 232 KGSGRWNHSWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFI 411
KG G S+G++ DD+ + WTG I+GPP T YE +++ LK+ CG YP+ PPT RF
Sbjct: 25 KGIGDGTVSYGMDDADDIYMQSWTGTILGPPNTAYEGKIFQLKLFCGKEYPESPPTVRFQ 84
Query: 412 SRIHMNCVNSQTGLVDNRQVPILARWQRDYTIKQFFKK 525
+RI+M CVN +TG+V+ P+L W+R+YT++ K
Sbjct: 85 TRINMACVNPETGVVEPSLFPMLTNWRREYTMEDILVK 122
Score = 53.2 bits (122), Expect = 2e-07
Identities = 22/32 (68%), Positives = 29/32 (90%)
Frame = +2
Query: 161 MANPSSGVVVPRNFRLLEELEQGQKGVGDGTI 256
M++ + VVVPRNFRLLEELE+G+KG+GDGT+
Sbjct: 1 MSSEEAKVVVPRNFRLLEELERGEKGIGDGTV 32
>At2g36060.1 68415.m04427 ubiquitin-conjugating enzyme family
protein similar to DNA-binding protein CROC-1B [Homo
sapiens] GI:1066082; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 145
Score = 108 bits (260), Expect = 3e-24
Identities = 46/93 (49%), Positives = 64/93 (68%)
Frame = +1
Query: 232 KGSGRWNHSWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFI 411
KG G S+G++ DD+ + WTG IIGP T +E R+Y LK+ C YP++PPT RF
Sbjct: 26 KGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPTVRFH 85
Query: 412 SRIHMNCVNSQTGLVDNRQVPILARWQRDYTIK 510
SRI+M CVN TG+VD+++ +LA WQR YT++
Sbjct: 86 SRINMTCVNHDTGVVDSKKFGVLANWQRQYTME 118
Score = 52.8 bits (121), Expect = 2e-07
Identities = 22/27 (81%), Positives = 26/27 (96%)
Frame = +2
Query: 176 SGVVVPRNFRLLEELEQGQKGVGDGTI 256
S VVVPRNFRLLEELE+G+KG+GDGT+
Sbjct: 7 SSVVVPRNFRLLEELERGEKGIGDGTV 33
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 507 QTVLQEVRRLMTLKDNMKLSQPPEGSTF 590
+ +L ++++ M N KL QPPEG+ F
Sbjct: 118 EDILTQLKKEMAASHNRKLVQPPEGTFF 145
>At3g52560.1 68416.m05784 ubiquitin-conjugating enzyme family
protein similar to DNA-binding protein CROC-1B [Homo
sapiens] GI:1066082; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 146
Score = 107 bits (257), Expect = 8e-24
Identities = 45/93 (48%), Positives = 65/93 (69%)
Frame = +1
Query: 232 KGSGRWNHSWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFI 411
KG G S+G++ DD+ + WTG IIGP T +E R+Y LK+ C YP++PPT RF
Sbjct: 27 KGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPTVRFH 86
Query: 412 SRIHMNCVNSQTGLVDNRQVPILARWQRDYTIK 510
SR++M CVN +TG+VD ++ +LA WQR+YT++
Sbjct: 87 SRVNMACVNHETGVVDPKKFGLLANWQREYTME 119
Score = 53.2 bits (122), Expect = 2e-07
Identities = 22/32 (68%), Positives = 28/32 (87%)
Frame = +2
Query: 161 MANPSSGVVVPRNFRLLEELEQGQKGVGDGTI 256
+ + S VVVPRNFRLLEELE+G+KG+GDGT+
Sbjct: 3 LGSGGSSVVVPRNFRLLEELERGEKGIGDGTV 34
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 507 QTVLQEVRRLMTLKDNMKLSQPPEGSTF 590
+ +L ++++ M+ N KL QPPEG+ F
Sbjct: 119 EDILVQLKKEMSTSHNRKLVQPPEGTCF 146
>At2g36060.2 68415.m04428 ubiquitin-conjugating enzyme family
protein similar to DNA-binding protein CROC-1B [Homo
sapiens] GI:1066082; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 146
Score = 104 bits (249), Expect = 7e-23
Identities = 46/94 (48%), Positives = 64/94 (68%), Gaps = 1/94 (1%)
Frame = +1
Query: 232 KGSGRWNHSWGLESDDDMTLTHWTGMIIGPPR-TPYENRMYSLKIECGTRYPDEPPTARF 408
KG G S+G++ DD+ + WTG IIGP T +E R+Y LK+ C YP++PPT RF
Sbjct: 26 KGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNVTVHEGRIYQLKLFCDKDYPEKPPTVRF 85
Query: 409 ISRIHMNCVNSQTGLVDNRQVPILARWQRDYTIK 510
SRI+M CVN TG+VD+++ +LA WQR YT++
Sbjct: 86 HSRINMTCVNHDTGVVDSKKFGVLANWQRQYTME 119
Score = 52.8 bits (121), Expect = 2e-07
Identities = 22/27 (81%), Positives = 26/27 (96%)
Frame = +2
Query: 176 SGVVVPRNFRLLEELEQGQKGVGDGTI 256
S VVVPRNFRLLEELE+G+KG+GDGT+
Sbjct: 7 SSVVVPRNFRLLEELERGEKGIGDGTV 33
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 507 QTVLQEVRRLMTLKDNMKLSQPPEGSTF 590
+ +L ++++ M N KL QPPEG+ F
Sbjct: 119 EDILTQLKKEMAASHNRKLVQPPEGTFF 146
>At1g70660.1 68414.m08146 ubiquitin-conjugating enzyme family
protein similar to TRAF6-regulated IKK activator 1 beta
Uev1A [Homo sapiens] GI:10880969; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 159
Score = 104 bits (249), Expect = 7e-23
Identities = 42/93 (45%), Positives = 63/93 (67%)
Frame = +1
Query: 232 KGSGRWNHSWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFI 411
KG G S+G++ DD+ + WTG I+GP T YE +++ LK+ CG YP+ PPT RF
Sbjct: 25 KGIGDGTVSYGMDDADDILMQSWTGTILGPHNTAYEGKIFQLKLFCGKDYPESPPTVRFQ 84
Query: 412 SRIHMNCVNSQTGLVDNRQVPILARWQRDYTIK 510
SRI+M CVN + G+VD P+L+ W+R++T++
Sbjct: 85 SRINMACVNPENGVVDPSHFPMLSNWRREFTME 117
Score = 52.4 bits (120), Expect = 3e-07
Identities = 22/32 (68%), Positives = 27/32 (84%)
Frame = +2
Query: 161 MANPSSGVVVPRNFRLLEELEQGQKGVGDGTI 256
M + VVVPRNFRLLEELE+G+KG+GDGT+
Sbjct: 1 MGSEEEKVVVPRNFRLLEELERGEKGIGDGTV 32
>At3g52560.2 68416.m05785 ubiquitin-conjugating enzyme family
protein similar to DNA-binding protein CROC-1B [Homo
sapiens] GI:1066082; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 147
Score = 103 bits (246), Expect = 2e-22
Identities = 45/94 (47%), Positives = 65/94 (69%), Gaps = 1/94 (1%)
Frame = +1
Query: 232 KGSGRWNHSWGLESDDDMTLTHWTGMIIGPPR-TPYENRMYSLKIECGTRYPDEPPTARF 408
KG G S+G++ DD+ + WTG IIGP T +E R+Y LK+ C YP++PPT RF
Sbjct: 27 KGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNVTVHEGRIYQLKLFCDKDYPEKPPTVRF 86
Query: 409 ISRIHMNCVNSQTGLVDNRQVPILARWQRDYTIK 510
SR++M CVN +TG+VD ++ +LA WQR+YT++
Sbjct: 87 HSRVNMACVNHETGVVDPKKFGLLANWQREYTME 120
Score = 53.2 bits (122), Expect = 2e-07
Identities = 22/32 (68%), Positives = 28/32 (87%)
Frame = +2
Query: 161 MANPSSGVVVPRNFRLLEELEQGQKGVGDGTI 256
+ + S VVVPRNFRLLEELE+G+KG+GDGT+
Sbjct: 3 LGSGGSSVVVPRNFRLLEELERGEKGIGDGTV 34
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 507 QTVLQEVRRLMTLKDNMKLSQPPEGSTF 590
+ +L ++++ M+ N KL QPPEG+ F
Sbjct: 120 EDILVQLKKEMSTSHNRKLVQPPEGTCF 147
>At5g25760.1 68418.m03057 ubiquitin-conjugating enzyme, putative
similar to SP|O60015 Ubiquitin-conjugating enzyme E2-21
kDa (EC 6.3.2.19) (Ubiquitin-protein ligase) (Ubiquitin
carrier protein) {Pichia angusta}; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 157
Score = 50.8 bits (116), Expect = 9e-07
Identities = 22/58 (37%), Positives = 32/58 (55%)
Frame = +1
Query: 277 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNSQTG 450
DD + WT +I GP TPYE ++ L YP +PP RF+++I V+ +TG
Sbjct: 30 DDTNIFKWTALIKGPSETPYEGGVFQLAFSVPEPYPLQPPQVRFLTKIFHPNVHFKTG 87
>At5g62540.1 68418.m07849 ubiquitin-conjugating enzyme 3 (UBC3) E2;
identical to gi:431261, SP:P42746
Length = 150
Score = 47.6 bits (108), Expect = 9e-06
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +1
Query: 280 DMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRI-HMN 429
D + HW +I GP TP++ + L + YP++PP RF+SR+ H N
Sbjct: 30 DNNIMHWNALIFGPEDTPWDGGTFKLTLHFTEDYPNKPPIVRFVSRMFHPN 80
>At2g02760.1 68415.m00219 ubiquitin-conjugating enzyme 2 (UBC2) E2;
identical to gi:2689242, SP:P42745
Length = 152
Score = 47.6 bits (108), Expect = 9e-06
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +1
Query: 262 GLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRI-HMN 429
G D+++ L W +I GP TP++ + L ++ YP++PPT RF+SR+ H N
Sbjct: 26 GAPQDNNIML--WNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPN 80
>At1g14400.2 68414.m01708 ubiquitin-conjugating enzyme 1 (UBC1) E2;
identical to gi:431259, SP:P25865
Length = 152
Score = 47.6 bits (108), Expect = 9e-06
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +1
Query: 262 GLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRI-HMN 429
G D+++ L W +I GP TP++ + L ++ YP++PPT RF+SR+ H N
Sbjct: 26 GAPQDNNIML--WNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPN 80
>At1g14400.1 68414.m01707 ubiquitin-conjugating enzyme 1 (UBC1) E2;
identical to gi:431259, SP:P25865
Length = 152
Score = 47.6 bits (108), Expect = 9e-06
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +1
Query: 262 GLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRI-HMN 429
G D+++ L W +I GP TP++ + L ++ YP++PPT RF+SR+ H N
Sbjct: 26 GAPQDNNIML--WNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPN 80
>At3g24515.1 68416.m03077 ubiquitin-conjugating enzyme, putative
similar to Ubiquitin-conjugating enzyme E2
(Ubiquitin-protein ligase) (Ubiquitin carrier protein)
from {Xenopus laevis} SP|P51669, {Schizosaccharomyces
pombe} SP|P46595, {Caenorhabditis elegans} SP|P35129;
contains Pfam profile PF00179: Ubiquitin-conjugating
enzyme
Length = 409
Score = 45.6 bits (103), Expect = 3e-05
Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +1
Query: 271 SDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRI-HMNCVNSQT 447
S D T + I GP T Y N +++LKI+ RYP +PP F + I H N NS
Sbjct: 38 SGDFSTFSTIDAQIEGPEDTVYANGIFNLKIQIPERYPFQPPIVSFATPIYHPNIDNSGR 97
Query: 448 GLVDNRQVPILARWQRDYTI 507
+D +P WQ I
Sbjct: 98 ICLDILNLPPKGAWQPSLNI 117
>At1g36340.1 68414.m04516 ubiquitin-conjugating enzyme family
protein similar to Ubiquitin-conjugating enzyme E2-16
kDa (EC 6.3.2.19) (Ubiquitin-protein ligase) (Ubiquitin
carrier protein) from {Schizosaccharomyces pombe}
SP|P46595, {Caenorhabditis elegans} SP|P35129; contains
Pfam profile PF00179: Ubiquitin-conjugating enzyme
Length = 154
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = +1
Query: 298 WTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNSQTGLVDN 462
WT +I GP TPYE M++L I+ T YP +PP F + I+ +N + + N
Sbjct: 39 WTAVIRGPDGTPYEGGMFNLSIKFPTDYPFKPPKFTFKTPIYHPNINDEGSICMN 93
>At5g50870.1 68418.m06304 ubiquitin-conjugating enzyme, putative
strong similarity to ubiquitin conjugating enzyme
[Lycopersicon esculentum] GI:886679; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 192
Score = 44.4 bits (100), Expect = 8e-05
Identities = 21/56 (37%), Positives = 31/56 (55%)
Frame = +1
Query: 289 LTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNSQTGLV 456
LT TG I GP TPYE + + I YP EPP +F +++ ++SQ+G +
Sbjct: 32 LTRLTGTIPGPIGTPYEGGTFQIDITMPDGYPFEPPKMQFSTKVWHPNISSQSGAI 87
>At5g59300.1 68418.m07430 ubiquitin-conjugating enzyme 7 (UBC7) E2;
identical to gi:992703, SP:P42747
Length = 198
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 247 WNHS-WGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFIS 414
WN S + +S D + W+ IIGPP T YE ++ + YP+ PPT RF S
Sbjct: 51 WNLSPYQNQSCDCYNIFEWSVTIIGPPDTLYEGGFFNAIMTFPQNYPNSPPTVRFTS 107
>At3g46460.1 68416.m05037 ubiquitin-conjugating enzyme 13 (UBC13)
E2; identical to gi:992706
Length = 166
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +1
Query: 277 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRI-HMN 429
D+ + W+ IIGPP T YE + + YP+ PPT RF S I H N
Sbjct: 30 DEKNIFEWSVTIIGPPDTLYEGGFFYAIMSFPQNYPNSPPTVRFTSDIWHPN 81
>At3g13550.1 68416.m01703 ubiquitin-conjugating enzyme (COP10)
identical to ubiquitin-conjugating enzyme COP10
[Arabidopsis thaliana] GI:20065779; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 182
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/45 (44%), Positives = 26/45 (57%)
Frame = +1
Query: 289 LTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIH 423
L HW IIGP TPYE ++ L I + YP +PP F +RI+
Sbjct: 65 LYHWIATIIGPSGTPYEGGIFFLDIIFPSDYPFKPPKLVFKTRIY 109
>At3g08690.1 68416.m01010 ubiquitin-conjugating enzyme 11 (UBC11)
E2; identical to gi:12643427, SP:P35134
Length = 148
Score = 42.3 bits (95), Expect = 3e-04
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +1
Query: 295 HWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNS 441
HW I+GPP +PY ++ + I YP +PP F ++++ +NS
Sbjct: 32 HWQATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVSFKTKVYHPNINS 80
>At3g08700.1 68416.m01011 ubiquitin-conjugating enzyme, putative
strong similar to ubiquitin-conjugating enzymes E2-17
from [Arabidopsis thaliana] SP|P35134, SP|P35132,
SP|P35133; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 149
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/65 (27%), Positives = 38/65 (58%)
Frame = +1
Query: 250 NHSWGLESDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMN 429
N S G +++D + HW I+GP +PY ++++ I+ + YP +PP F ++++
Sbjct: 20 NCSAGPVAEED--IFHWQATIMGPHDSPYSGGVFTVSIDFSSDYPFKPPKVNFKTKVYHP 77
Query: 430 CVNSQ 444
++S+
Sbjct: 78 NIDSK 82
>At1g78870.2 68414.m09194 ubiquitin-conjugating enzyme, putative
nearly identical to ubiquitin-conjugating enzyme E2
[Catharanthus roseus] GI:5381319; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 153
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/51 (33%), Positives = 32/51 (62%)
Frame = +1
Query: 271 SDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIH 423
S+D+M ++ MI+GP ++PYE ++ L++ YP P RF+++I+
Sbjct: 30 SEDNMR--YFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIY 78
>At1g78870.1 68414.m09193 ubiquitin-conjugating enzyme, putative
nearly identical to ubiquitin-conjugating enzyme E2
[Catharanthus roseus] GI:5381319; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 112
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/51 (33%), Positives = 32/51 (62%)
Frame = +1
Query: 271 SDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIH 423
S+D+M ++ MI+GP ++PYE ++ L++ YP P RF+++I+
Sbjct: 30 SEDNMR--YFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIY 78
>At1g16890.2 68414.m02044 ubiquitin-conjugating enzyme, putative
nearly identical to ubiquitin-conjugating enzyme E2
[Catharanthus roseus] GI:5381319; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 153
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/51 (29%), Positives = 30/51 (58%)
Frame = +1
Query: 271 SDDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIH 423
S + + ++ MI+GP ++PYE ++ L++ YP P RF+++I+
Sbjct: 28 SPSEENMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIY 78
>At3g55380.1 68416.m06151 ubiquitin-conjugating enzyme 14 (UBC14)
E2; UbcAT3; identical to gi:2129757, S46656
Length = 167
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +1
Query: 277 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRI-HMN 429
D+ + W+ I+GPP T YE ++ + YP PPT F S + H N
Sbjct: 31 DEKNVFQWSVSIMGPPDTLYEGGFFNAIMSFPENYPVSPPTVTFTSEMWHPN 82
>At5g41700.4 68418.m05071 ubiquitin-conjugating enzyme 8 (UBC8) E2;
identical to gi:297882, SP:P35131
Length = 149
Score = 37.9 bits (84), Expect = 0.007
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 295 HWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNS 441
HW I+GP +PY ++ + I YP +PP F +++ +NS
Sbjct: 33 HWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS 81
>At5g41700.3 68418.m05068 ubiquitin-conjugating enzyme 8 (UBC8) E2;
identical to gi:297882, SP:P35131
Length = 145
Score = 37.9 bits (84), Expect = 0.007
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 295 HWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNS 441
HW I+GP +PY ++ + I YP +PP F +++ +NS
Sbjct: 32 HWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS 80
>At5g41700.2 68418.m05070 ubiquitin-conjugating enzyme 8 (UBC8) E2;
identical to gi:297882, SP:P35131
Length = 148
Score = 37.9 bits (84), Expect = 0.007
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 295 HWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNS 441
HW I+GP +PY ++ + I YP +PP F +++ +NS
Sbjct: 32 HWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS 80
>At5g41700.1 68418.m05069 ubiquitin-conjugating enzyme 8 (UBC8) E2;
identical to gi:297882, SP:P35131
Length = 148
Score = 37.9 bits (84), Expect = 0.007
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 295 HWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNS 441
HW I+GP +PY ++ + I YP +PP F +++ +NS
Sbjct: 32 HWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS 80
>At1g16890.1 68414.m02043 ubiquitin-conjugating enzyme, putative
nearly identical to ubiquitin-conjugating enzyme E2
[Catharanthus roseus] GI:5381319; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 120
Score = 37.9 bits (84), Expect = 0.007
Identities = 14/45 (31%), Positives = 28/45 (62%)
Frame = +1
Query: 289 LTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIH 423
+ ++ MI+GP ++PYE ++ L++ YP P RF+++I+
Sbjct: 1 MRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIY 45
>At5g53300.2 68418.m06625 ubiquitin-conjugating enzyme 10 (UBC10)
E2; identical to gi:297877, SP:P35133
Length = 148
Score = 37.5 bits (83), Expect = 0.009
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 295 HWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNS 441
HW I+GP +PY ++ + I YP +PP F +++ +NS
Sbjct: 32 HWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS 80
>At5g53300.1 68418.m06624 ubiquitin-conjugating enzyme 10 (UBC10)
E2; identical to gi:297877, SP:P35133
Length = 148
Score = 37.5 bits (83), Expect = 0.009
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 295 HWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNS 441
HW I+GP +PY ++ + I YP +PP F +++ +NS
Sbjct: 32 HWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS 80
>At1g64230.1 68414.m07276 ubiquitin-conjugating enzyme, putative
identical or nearly so to Ubiquitin-conjugating enzymes
SP|P35132, SP|P35131, SP|P35133 from {Arabidopsis
thaliana}; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 148
Score = 37.5 bits (83), Expect = 0.009
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 295 HWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNS 441
HW I+GP +PY ++ + I YP +PP F +++ VNS
Sbjct: 32 HWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVNS 80
>At4g27960.2 68417.m04012 ubiquitin-conjugating enzyme E2-17 kDa 9
(UBC9) E2; identical to gi:297883, SP:P35132; identical
to cDNA UBC9 for ubiquitin conjugating enzyme homolog
GI:297883
Length = 178
Score = 37.1 bits (82), Expect = 0.012
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 295 HWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNS 441
HW I+GP +PY ++ + I YP +PP F +++ +NS
Sbjct: 62 HWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS 110
>At4g27960.1 68417.m04011 ubiquitin-conjugating enzyme E2-17 kDa 9
(UBC9) E2; identical to gi:297883, SP:P35132; identical
to cDNA UBC9 for ubiquitin conjugating enzyme homolog
GI:297883
Length = 148
Score = 37.1 bits (82), Expect = 0.012
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 295 HWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNS 441
HW I+GP +PY ++ + I YP +PP F +++ +NS
Sbjct: 32 HWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS 80
>At2g16740.1 68415.m01920 ubiquitin-conjugating enzyme, putative
strong similarity to SP|P35133 Ubiquitin-conjugating
enzyme E2-17 kDa 10 (EC 6.3.2.19) (Ubiquitin- protein
ligase 10) (Ubiquitin carrier protein 10) {Arabidopsis
thaliana}; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 148
Score = 37.1 bits (82), Expect = 0.012
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 295 HWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNS 441
HW I+GP +PY ++ + I YP +PP F +++ +NS
Sbjct: 32 HWQATIMGPNESPYSGGVFLVNIHFPPDYPFKPPKVVFRTKVFHPNINS 80
>At1g45050.1 68414.m05165 ubiquitin-conjugating enzyme 15 (UBC15)
E2; identical to ubiquitin-conjugating enzyme 15
GI:2801442 from [Arabidopsis thaliana]
Length = 161
Score = 37.1 bits (82), Expect = 0.012
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +1
Query: 289 LTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFIS 414
L WT + G P T Y N Y L++E YP E P F+S
Sbjct: 43 LQKWTIDVTGAPGTLYANETYQLQVEFPEHYPMEAPQVVFVS 84
>At5g05080.1 68418.m00539 ubiquitin-conjugating enzyme, putative
similar to SP|Q16763 Ubiquitin-conjugating enzyme E2-24
kDa (EC 6.3.2.19) (Ubiquitin- protein ligase) (Ubiquitin
carrier protein) {Homo sapiens}; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 251
Score = 36.7 bits (81), Expect = 0.016
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 310 IIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRI-HMNCVNS 441
I GP TPYEN ++ +K+ +P PP F+++I H N ++
Sbjct: 46 IEGPVGTPYENGLFRMKLALSHDFPHSPPKGYFMTKIFHPNVASN 90
>At2g32790.1 68415.m04014 ubiquitin-conjugating enzyme, putative
similar to ubiquitin conjugating enzyme from [Oryza
sativa] GI:1373001, {Arabidopsis thaliana} SP|P35134,
SP|P35131; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 177
Score = 36.3 bits (80), Expect = 0.021
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +1
Query: 298 WTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRI-HMNCVNSQTGLVDNRQVP 474
W + GP PYE ++++ + +YP EPP F ++I H N S+ G + V
Sbjct: 62 WEATVNGPVGCPYEKGVFTVSVHIPPKYPYEPPKITFKTKIFHPNI--SEIGEI---FVD 116
Query: 475 IL-ARWQRDYTI 507
IL +RW TI
Sbjct: 117 ILGSRWSSALTI 128
>At5g42990.1 68418.m05243 ubiquitin-conjugating enzyme 18 (UBC18)
E2; identical to gi:2801448
Length = 161
Score = 34.3 bits (75), Expect = 0.086
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +1
Query: 289 LTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFI 411
L W + G P T Y N Y+L++E YP E P F+
Sbjct: 43 LQKWVIEVTGAPGTLYANETYNLQVEFPQHYPMEAPQVIFV 83
>At5g56150.2 68418.m07005 ubiquitin-conjugating enzyme, putative
strong similarity to ubiquitin-conjugating enzyme UBC2
[Mesembryanthemum crystallinum] GI:5762457, UBC4 [Pisum
sativum] GI:456568; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 148
Score = 33.9 bits (74), Expect = 0.11
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +1
Query: 277 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNS 441
DDM W I+GP +P+ ++ + I YP +PP F ++++ +NS
Sbjct: 28 DDMF--QWQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAFRTKVYHPNINS 80
>At5g56150.1 68418.m07004 ubiquitin-conjugating enzyme, putative
strong similarity to ubiquitin-conjugating enzyme UBC2
[Mesembryanthemum crystallinum] GI:5762457, UBC4 [Pisum
sativum] GI:456568; contains Pfam profile PF00179:
Ubiquitin-conjugating enzyme
Length = 148
Score = 33.9 bits (74), Expect = 0.11
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +1
Query: 277 DDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNS 441
DDM W I+GP +P+ ++ + I YP +PP F ++++ +NS
Sbjct: 28 DDMF--QWQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAFRTKVYHPNINS 80
>At2g46030.1 68415.m05726 ubiquitin-conjugating enzyme 6 (UBC6) E2;
identical to gi|431267, SP:P42750, PIR:S52661; contains
a ubiquitin-conjugating enzymes active site (PDOC00163)
Length = 183
Score = 33.5 bits (73), Expect = 0.15
Identities = 16/61 (26%), Positives = 34/61 (55%)
Frame = +1
Query: 274 DDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNSQTGL 453
+DD+ + + T GP + Y+ ++ +K+E YP + P+ F+++I+ V+ +G
Sbjct: 26 NDDLQMFYVT--FHGPTDSLYQGGVWKIKVELPEAYPYKSPSVGFVNKIYHPNVDESSGA 83
Query: 454 V 456
V
Sbjct: 84 V 84
>At1g75440.1 68414.m08763 ubiquitin-conjugating enzyme 16 (UBC16)
E2; identical to gi:2801444, GB:AAC39325 from
[Arabidopsis thaliana] (Plant Mol. Biol. 23 (2), 387-396
(1993))
Length = 161
Score = 33.5 bits (73), Expect = 0.15
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +1
Query: 289 LTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFI 411
L W +IG P T Y N Y L+++ YP E P F+
Sbjct: 43 LQRWIIEVIGAPGTLYANDTYQLQVDFPEHYPMESPQVIFL 83
>At1g63800.1 68414.m07220 ubiquitin-conjugating enzyme 5 (UBC5) E2;
identical to gi:431269, SP:P42749
Length = 185
Score = 32.7 bits (71), Expect = 0.26
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +1
Query: 316 GPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNSQTGLV 456
GP + YE ++ +++E YP + P+ FI++I+ V+ +G V
Sbjct: 38 GPKDSIYEGGVWKIRVELPDAYPYKSPSVGFITKIYHPNVDEMSGSV 84
>At1g50490.1 68414.m05662 ubiquitin-conjugating enzyme 20 (UBC20)
nearly identical to ubiquitin-conjugating enzyme UBC20
[Arabidopsis thaliana] GI:22530867; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 180
Score = 32.7 bits (71), Expect = 0.26
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = +1
Query: 298 WTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNSQTGLVDNRQVPI 477
W G I G T +E Y L + YP +PP +F C + + N + I
Sbjct: 67 WKGTITGSKDTVFEGTEYRLSLSFSNDYPFKPPKVKF----ETCCFHPNVDVYGNICLDI 122
Query: 478 LA-RWQRDYTIK 510
L +W Y ++
Sbjct: 123 LQDKWSSAYDVR 134
>At2g33770.1 68415.m04141 ubiquitin-conjugating enzyme family
protein low similarity to ubiquitin-conjugating
BIR-domain enzyme APOLLON [Homo sapiens] GI:8489831,
ubiquitin-conjugating enzyme [Mus musculus] GI:3319990;
contains Pfam profile PF00179: Ubiquitin-conjugating
enzyme
Length = 907
Score = 31.9 bits (69), Expect = 0.46
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 310 IIGPPRTPYENRMYSLKIECGTRYPDEPPTARFIS 414
++G P TPY + ++ I +YP EPP + S
Sbjct: 698 LVGAPGTPYHDGLFFFDIMLPPQYPHEPPMVHYHS 732
>At4g36410.1 68417.m05173 ubiquitin-conjugating enzyme 17 (UBC17)
E2; identical to gi:2801446
Length = 161
Score = 31.5 bits (68), Expect = 0.60
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +1
Query: 289 LTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARF 408
L W + G P T Y N Y L++E YP E P F
Sbjct: 43 LQRWIIEVHGVPGTLYANETYQLQVEFPEHYPMEAPQVIF 82
>At5g41340.1 68418.m05024 ubiquitin-conjugating enzyme 4 (UBC4) E2;
identical to gi:431265, SP:P42748
Length = 187
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = +1
Query: 316 GPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNSQTGLV 456
GP + Y+ ++ +++E YP + P+ FI++I+ V+ +G V
Sbjct: 38 GPKDSLYQGGVWKIRVELPDAYPYKSPSVGFITKIYHPNVDELSGSV 84
>At3g20060.1 68416.m02537 ubiquitin-conjugating enzyme 19 (UBC19)
nearly identical to ubiquitin-conjugating enzyme UBC19
[Arabidopsis thaliana] GI:22530865; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 181
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Frame = +1
Query: 298 WTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFISRIHMNCVNSQTGLVDNRQVPI 477
W G I G T +E Y L + YP + P +F C + L N + I
Sbjct: 68 WKGTITGSKDTVFEGTEYRLSLTFSNDYPFKSPKVKF----ETCCFHPNVDLYGNICLDI 123
Query: 478 LA-RWQRDYTIK 510
L +W Y ++
Sbjct: 124 LQDKWSSAYDVR 135
>At1g53020.1 68414.m06002 ubiquitin-conjugating enzyme family
protein similar to ubiquitin-conjugating enzyme
GB:3319990 from [Mus musculus]; contains Pfam profile
PF00179: Ubiquitin-conjugating enzyme
Length = 1163
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +1
Query: 307 MIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFIS---RIHMNCVN 438
+IIG TPY + ++ I+ YP PP + S RI+ N N
Sbjct: 306 VIIGAEGTPYHDGLFFFDIQFPDTYPSVPPNVHYHSGGLRINPNLYN 352
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = +1
Query: 307 MIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFIS---RIHMNCVNSQTGLV 456
+IIG TPY + ++ I+ YP PP + S RI+ N N LV
Sbjct: 952 VIIGAEGTPYHDGLFFFDIQFPDTYPSVPPNVYYHSGGLRINPNLYNCGKVLV 1004
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 307 MIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFIS 414
+IIG TPY + ++ I+ YP PP + S
Sbjct: 640 VIIGAEGTPYHDGLFFFDIQFPDTYPSVPPKVHYHS 675
>At1g55915.1 68414.m06413 expressed protein similar to Hypothetical
30.6 kDa protein in ACT5-YCK1 intergenic region
(Swiss-Prot:P38838) [Saccharomyces cerevisiae]; similar
to Yhr134wp (GI:500671) [Saccharomyces cerevisiae]
Length = 404
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -2
Query: 387 IRVSCSTFNFKGVHSILVGCPWWANNHSSPMSKSH 283
IR +C++ N K V C W+N HS P S SH
Sbjct: 236 IRETCTSVNGKSVKR----CNSWSNAHSCPPSSSH 266
>At3g17000.1 68416.m02171 ubiquitin-conjugating enzyme, putative
similar to Non-Canonical UBiquitin Conjugating Enzyme 1
(NCUBE1) from [Gallus gallus] GI:7362937, [Mus musculus]
GI:7363050, [Homo sapiens] GI:7362973; contains Pfam
profile PF00179: Ubiquitin-conjugating enzyme
Length = 309
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Frame = +1
Query: 271 SDDDMTLT------HWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPT 399
SDD M+L W I GP T +E +Y +I+ YP +PP+
Sbjct: 28 SDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPADYPFKPPS 76
>At5g16590.1 68418.m01942 leucine-rich repeat transmembrane protein
kinase, putative
Length = 625
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 343 RMYSLKIECGTRYPDEPPTARFISRI 420
R+ ++ I C T+YPD PT ++R+
Sbjct: 584 RLLNIGISCTTQYPDSRPTMPEVTRL 609
>At3g57870.1 68416.m06451 ubiquitin-conjugating enzyme, putative
strong similarity to SP|P50550 Ubiquitin-like protein
SUMO-1 conjugating enzyme (EC 6.3.2.19) (SUMO- 1-protein
ligase) (Ubiquitin carrier protein)
(Ubiquitin-conjugating enzyme UbcE2A) {Xenopus laevis};
contains Pfam profile PF00179: Ubiquitin-conjugating
enzyme
Length = 160
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +1
Query: 274 DDDMTLTHWTGMIIGPPRTPYENRMYSLKIECGTRYPDEPPTARF 408
D + L W I G T +E + L + YP +PP +F
Sbjct: 34 DGTVNLMVWHCTIPGKAGTDWEGGFFPLTMHFSEDYPSKPPKCKF 78
>At3g15355.1 68416.m01945 ubiquitin-conjugating enzyme-related
similar to ubiquitin-conjugating enzyme (GI:3319990)
[Mus musculus]; similar to Baculoviral IAP
repeat-containing protein 6 (Ubiquitin-conjugating
BIR-domain enzyme apollon) (Swiss-Prot:Q9NR09) [Homo
sapiens];
Length = 609
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = +1
Query: 307 MIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFIS---RIHMNCVN 438
+IIG TPY + ++ I YP PP + S RI+ N N
Sbjct: 367 VIIGAQGTPYHDGLFFFDIFFPDTYPSTPPIVHYHSGGLRINPNLYN 413
>At5g56890.1 68418.m07099 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 1113
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = -2
Query: 303 SPMSKSHIIIAFK----TPRMVPSPTPFWPCSSSSKRRKFR 193
S +S +H ++F +P + PSPT +P SSS+ K R
Sbjct: 398 SLISPAHAPVSFSMKRISPALAPSPTQVFPLRSSSRPSKSR 438
>At5g08200.1 68418.m00959 peptidoglycan-binding LysM
domain-containing protein contains Pfam profile PF01476:
LysM domain
Length = 409
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2
Query: 252 VPSPTPFWPCSSSSKRRKFRGTTTPDDGF 166
+PSPT P SSSS F G+ +PD G+
Sbjct: 51 IPSPTSSPPPSSSSP--PFHGSNSPDRGY 77
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = -2
Query: 249 PSPTPFWPCSSSS--KRRKFRGTTTPDDGFAMITVSPA*RT 133
P P P PC SS KRR T D A + V+P +T
Sbjct: 80 PPPFPPSPCGGSSLRKRRSQSATDNADGSIAKLYVAPISKT 120
>At2g16920.1 68415.m01949 ubiquitin-conjugating enzyme family
protein low similarity to ubiquitin-conjugating
BIR-domain enzyme APOLLON [Homo sapiens] GI:8489831,
ubiquitin-conjugating enzyme [Mus musculus] GI:3319990;
contains Pfam profile PF00179: Ubiquitin-conjugating
enzyme
Length = 1102
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 307 MIIGPPRTPYENRMYSLKIECGTRYPDEPPTARFIS 414
+I+G TPY++ ++ + YP PP+A + S
Sbjct: 885 VIVGAFGTPYQDGLFFFDFHLPSDYPSVPPSAYYHS 920
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,615,441
Number of Sequences: 28952
Number of extensions: 325898
Number of successful extensions: 797
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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