Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00893
         (723 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1; ...    99   1e-19
UniRef50_Q618J0 Cluster: Putative uncharacterized protein CBG146...    37   0.58 
UniRef50_Q88Z75 Cluster: Transcription regulator; n=1; Lactobaci...    35   1.8  
UniRef50_Q3CH99 Cluster: Ku; n=2; Thermoanaerobacter ethanolicus...    34   4.1  

>UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 77

 Score = 99.1 bits (236), Expect = 1e-19
 Identities = 47/58 (81%), Positives = 51/58 (87%)
 Frame = +3

Query: 549 LFYLVLSDLADFVVPQSINKRPKVLYKINLKQTKGIRPTGVTSKEKQNSYFHLIPSIF 722
           LF ++L+D ADFVVPQSINKRPK LYKINLKQTKGIR TG TSKEKQN YF+LIP IF
Sbjct: 17  LFMIILADPADFVVPQSINKRPKHLYKINLKQTKGIRQTGDTSKEKQNCYFYLIPRIF 74


>UniRef50_Q618J0 Cluster: Putative uncharacterized protein CBG14641;
           n=1; Caenorhabditis briggsae|Rep: Putative
           uncharacterized protein CBG14641 - Caenorhabditis
           briggsae
          Length = 1690

 Score = 36.7 bits (81), Expect = 0.58
 Identities = 17/44 (38%), Positives = 28/44 (63%)
 Frame = +2

Query: 155 YLVSVKTSR*ATRHVAFDTENLKNTYI*KLIYFIHTIKHSSLIF 286
           ++++++++  AT  VAFD E + NT I K + FI T  H+S  F
Sbjct: 823 HIIAIRSACAATIIVAFDEEEISNTCIEKFLEFIETNSHNSFAF 866


>UniRef50_Q88Z75 Cluster: Transcription regulator; n=1;
           Lactobacillus plantarum|Rep: Transcription regulator -
           Lactobacillus plantarum
          Length = 289

 Score = 35.1 bits (77), Expect = 1.8
 Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
 Frame = +2

Query: 32  ILINKTVINNKM-TNHRDIGTPMNQCTVASAKKKFSQNARF----IYLVSVKTSR 181
           IL+ +T I +K+ T   DI   +N C V + ++K  QNARF    +Y +S KT R
Sbjct: 175 ILLKRTKILSKIDTYQNDISIFLNNCIVLALERKNYQNARFYIQQLYQISEKTPR 229


>UniRef50_Q3CH99 Cluster: Ku; n=2; Thermoanaerobacter
           ethanolicus|Rep: Ku - Thermoanaerobacter ethanolicus
           ATCC 33223
          Length = 270

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +3

Query: 570 DLADFVVPQSINKRPKVLYKINLKQTKGIRPTGVTSKEKQN 692
           D   F+VP+ I  +P VL + ++K+TK +    V  + KQN
Sbjct: 107 DKTYFIVPEDIGTKPYVLLRDSMKETKRVAIAKVVIRSKQN 147


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 638,360,636
Number of Sequences: 1657284
Number of extensions: 12051785
Number of successful extensions: 21975
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21973
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58677691418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)