Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00893
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    27   2.1  
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   3.6  
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    25   8.3  

>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 212 ENLKNTYI*KLIYFIHTIKHSSLIFI 289
           ENLKNTY+ K +Y +  I+ S   F+
Sbjct: 452 ENLKNTYVFKELYSVRNIRPSFHSFL 477


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 89  TPMNQCTVASAKKKFSQNAR 148
           TP+ +CTVA A K+F  N R
Sbjct: 164 TPLEKCTVARACKQFPLNQR 183


>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 603 NKRPKVLYKINLKQTKGIRPTGVTSKEKQNSYFHLIPS 716
           N +P V + +  + T+GI+    ++  +QN+ F + PS
Sbjct: 139 NMQPNVSWNVLQEPTRGIKVPKESNNTQQNNQFVMEPS 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,779,010
Number of Sequences: 5004
Number of extensions: 55803
Number of successful extensions: 106
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)