Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00893
         (723 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4257| Best HMM Match : Collagen (HMM E-Value=0.00073)               29   2.9  
SB_14112| Best HMM Match : Amino_oxidase (HMM E-Value=3.3e-13)         29   3.8  

>SB_4257| Best HMM Match : Collagen (HMM E-Value=0.00073)
          Length = 863

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 178 TSLYGHQIYKTSILTKFFFCTGNRALIHRCTYISMVCHFVV 56
           +S Y  Q   T IL  FFFC G+     R TY S++ ++++
Sbjct: 96  SSAYQRQNLFTIILISFFFCVGHCLRAPRGTY-SVIANYII 135


>SB_14112| Best HMM Match : Amino_oxidase (HMM E-Value=3.3e-13)
          Length = 482

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -1

Query: 444 ITS*KGVAIHKKRSCSLYVFVQITVYIRTVTPDRWC*WKRLSNQNTK 304
           I+  KG+A H+ R CS          + T TPDR   +++L+    K
Sbjct: 94  ISDMKGIACHQTRQCSRACTCMSAQDMETYTPDRTNLYQKLTEMKQK 140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,904,519
Number of Sequences: 59808
Number of extensions: 388414
Number of successful extensions: 701
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)