Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00893
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm (myotubu...    29   2.5  
AF024503-3|AAG24098.3|  331|Caenorhabditis elegans Serpentine re...    29   2.5  
AF000263-13|AAO21393.1|  695|Caenorhabditis elegans Hypothetical...    28   7.8  
AF000263-12|AAO21392.1|  838|Caenorhabditis elegans Hypothetical...    28   7.8  
AF000263-11|AAL77184.1|  866|Caenorhabditis elegans Hypothetical...    28   7.8  
AF000263-8|AAK21461.1|  924|Caenorhabditis elegans Hypothetical ...    28   7.8  
AF000263-7|AAK21463.1|  925|Caenorhabditis elegans Hypothetical ...    28   7.8  

>AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm
            (myotubularin) family protein 5 protein.
          Length = 1744

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +2

Query: 155  YLVSVKTSR*ATRHVAFDTENLKNTYI*KLIYFIHTIKHSSLIF 286
            +++S+++S  ++  +AFD + + N  I K +  I T  H+S  F
Sbjct: 890  HIISIRSSCASSIIIAFDEDEINNMAIEKFLEVIETNSHNSFAF 933


>AF024503-3|AAG24098.3|  331|Caenorhabditis elegans Serpentine
           receptor, class j protein6 protein.
          Length = 331

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
 Frame = -3

Query: 154 YKTSILTKFFFCTGNRALIHRCTYIS-----MVCHFVVNYCFIY*NHL 26
           + T I   FF    N A+  RCT+I+     ++ HFV  Y  ++  HL
Sbjct: 73  FATFITDGFFTENANYAISSRCTFIAISYALLIIHFVYRYFILFHPHL 120


>AF000263-13|AAO21393.1|  695|Caenorhabditis elegans Hypothetical
           protein T08B2.5g protein.
          Length = 695

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +3

Query: 561 VLSDLADFVVPQSINKRPKVLYKINLKQTKGIRPTGVTSKEKQ 689
           ++ D+A +   Q  +K+ KV   I  K+TKGI    V S EKQ
Sbjct: 405 LVKDMAKWAKRQEKDKK-KVQISIKGKETKGIELKNVFSNEKQ 446


>AF000263-12|AAO21392.1|  838|Caenorhabditis elegans Hypothetical
           protein T08B2.5f protein.
          Length = 838

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +3

Query: 561 VLSDLADFVVPQSINKRPKVLYKINLKQTKGIRPTGVTSKEKQ 689
           ++ D+A +   Q  +K+ KV   I  K+TKGI    V S EKQ
Sbjct: 548 LVKDMAKWAKRQEKDKK-KVQISIKGKETKGIELKNVFSNEKQ 589


>AF000263-11|AAL77184.1|  866|Caenorhabditis elegans Hypothetical
           protein T08B2.5c protein.
          Length = 866

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +3

Query: 561 VLSDLADFVVPQSINKRPKVLYKINLKQTKGIRPTGVTSKEKQ 689
           ++ D+A +   Q  +K+ KV   I  K+TKGI    V S EKQ
Sbjct: 576 LVKDMAKWAKRQEKDKK-KVQISIKGKETKGIELKNVFSNEKQ 617


>AF000263-8|AAK21461.1|  924|Caenorhabditis elegans Hypothetical
           protein T08B2.5a protein.
          Length = 924

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +3

Query: 561 VLSDLADFVVPQSINKRPKVLYKINLKQTKGIRPTGVTSKEKQ 689
           ++ D+A +   Q  +K+ KV   I  K+TKGI    V S EKQ
Sbjct: 634 LVKDMAKWAKRQEKDKK-KVQISIKGKETKGIELKNVFSNEKQ 675


>AF000263-7|AAK21463.1|  925|Caenorhabditis elegans Hypothetical
           protein T08B2.5b protein.
          Length = 925

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +3

Query: 561 VLSDLADFVVPQSINKRPKVLYKINLKQTKGIRPTGVTSKEKQ 689
           ++ D+A +   Q  +K+ KV   I  K+TKGI    V S EKQ
Sbjct: 635 LVKDMAKWAKRQEKDKK-KVQISIKGKETKGIELKNVFSNEKQ 676


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,295,162
Number of Sequences: 27780
Number of extensions: 309640
Number of successful extensions: 650
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)