Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00893
         (723 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   1.7  
AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    23   2.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   8.9  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   8.9  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 587 NEVCQVR*YQIKQTFNYKDKCRVLSESRLKIALHPSKCMNSTVHF 453
           N  C V+  +IK + +Y      L+     +   PSKC  ++VH+
Sbjct: 329 NSRCSVKREKIKISVSYPST-ETLNTKCNTLERTPSKCSQTSVHY 372


>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 644 NKRNPSDGGHIKGKTK*LFSFNSEHF 721
           +KR P+    ++GK K   S NSE+F
Sbjct: 27  DKRAPTGHQEMQGKEKNSASLNSENF 52


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 74  HRDIGTPMNQCTVASAKKKFSQN 142
           H+D  TP +Q    SAK K SQ+
Sbjct: 502 HQDSATPADQPLDLSAKPKNSQD 524


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 131 IFFLHWQPCI 102
           + FL+W PCI
Sbjct: 334 VVFLYWLPCI 343


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 597 IEAQRSLPGQIVPNKTDL 544
           +E  +S PG++VP + DL
Sbjct: 48  VEELKSKPGKLVPLQCDL 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,708
Number of Sequences: 438
Number of extensions: 3770
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)