Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00892
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces pom...    85   8e-18
SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|...    62   6e-11
SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|...    62   8e-11
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   3.7  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    26   6.5  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    26   6.5  

>SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 171

 Score = 85.4 bits (202), Expect = 8e-18
 Identities = 39/51 (76%), Positives = 45/51 (88%)
 Frame = +1

Query: 235 VGGKCV*DLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLI 387
           + G    DLKVKRITPRHLQLAIRGDEELD+LI+ATIAGGGV+PHI+K L+
Sbjct: 107 LAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIRATIAGGGVLPHINKQLL 157



 Score = 77.4 bits (182), Expect = 2e-15
 Identities = 37/50 (74%), Positives = 44/50 (88%)
 Frame = +2

Query: 107 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASK 256
           LQFPVGR+ R LK +T ++ RVGA +AVYSAA+LEYLTAEVLELAGNA+K
Sbjct: 64  LQFPVGRVRRFLKAKTQNNMRVGAKSAVYSAAVLEYLTAEVLELAGNAAK 113


>SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 62.5 bits (145), Expect = 6e-11
 Identities = 32/61 (52%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
 Frame = +1

Query: 235 VGGKCV*DLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGGPGA 411
           + G    D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+I+  L+ K+ G G 
Sbjct: 67  LAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKQSGKGK 126

Query: 412 P 414
           P
Sbjct: 127 P 127



 Score = 62.1 bits (144), Expect = 8e-11
 Identities = 31/50 (62%), Positives = 38/50 (76%)
 Frame = +2

Query: 107 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASK 256
           L FPVGR+HR L+    +  RVGA A VY AA+LEYL AE+LELAGNA++
Sbjct: 25  LAFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAAR 73


>SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 132

 Score = 62.1 bits (144), Expect = 8e-11
 Identities = 31/50 (62%), Positives = 38/50 (76%)
 Frame = +2

Query: 107 LQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASK 256
           L FPVGR+HR L+    +  RVGA A VY AA+LEYL AE+LELAGNA++
Sbjct: 25  LAFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAAR 73



 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 30/57 (52%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
 Frame = +1

Query: 235 VGGKCV*DLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGG 402
           + G    D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+I+  L+ K  G
Sbjct: 67  LAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKTSG 123


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 199 RYFGISYSRGFGVGGKCV 252
           +Y G +YS G  V GKCV
Sbjct: 311 QYLGTNYSNGTAVDGKCV 328


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1297

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 477  TWHKSSPRLVK*FSIKIILVKWTVV 551
            +WHK S R VK  S      KW VV
Sbjct: 1017 SWHKESARTVKLLSNDFSKKKWKVV 1041


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/45 (22%), Positives = 22/45 (48%)
 Frame = -1

Query: 580 YLVRTNSSSHTTVHFTNIILIENYLTNLGDDLCQVCYDGRYQMQY 446
           Y++ T  + +   H    ++   Y   + D+LC  CYD   ++++
Sbjct: 7   YILVTGGAGYIGSHTVIELINHGYKVIIVDNLCNSCYDAVARVEF 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,019,360
Number of Sequences: 5004
Number of extensions: 61217
Number of successful extensions: 158
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)