Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00891
         (838 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||...    29   1.1  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    27   3.3  
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|...    27   4.4  
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    26   5.8  

>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 304 HSWSPIQASCFILHAYISSN 363
           H+WSPI + C I  AY SS+
Sbjct: 151 HAWSPIASHCLIATAYRSSS 170


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +2

Query: 404 NNQIVKFNAAGTLLLTIPAYSDTWSLNLPHSVTLLNIWIWYAWPIEKI*GSCARSWIEKL 583
           N  + K    GTLL+ +   +  + +N+P      N   W+   +  + GS A  WI  +
Sbjct: 739 NGALGKITLIGTLLVPMNLVTGLFGMNVPVPGRDTNNLAWFFGILGVLLGSIAIGWIITM 798

Query: 584 R 586
           R
Sbjct: 799 R 799


>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 570

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 116 CVFNYRSLVEVLISIGFVESIFVP 45
           C +NY  L+ +   +GF ES  +P
Sbjct: 186 CAYNYGGLIALRFFLGFTESCLLP 209


>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 381 ISPVLAIATDVGMQNKTRCLNGRPAVKGSPIVR 283
           +S  LAIA  +   NKTR LNG  A + + +++
Sbjct: 63  LSETLAIAFYLASLNKTRALNGTTAEEKAKVLQ 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,647,904
Number of Sequences: 5004
Number of extensions: 77081
Number of successful extensions: 179
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)