Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00891
         (838 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0201 + 2175660-2176892                                           31   1.5  
07_03_0581 + 19678266-19678949                                         29   4.6  
04_01_0348 + 4563391-4563689,4563965-4564145,4564186-4564467           29   6.1  

>10_01_0201 + 2175660-2176892
          Length = 410

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +3

Query: 696 NIAVRGFTVNAVYGNILDTWERHWIHEPT--LAGGYKERITSL 818
           NIA    TV  + G I  + + HW H+ T  L  GYK RI  L
Sbjct: 299 NIAHANHTVELLSGAIRGSADEHWRHDKTIPLLPGYKWRILKL 341


>07_03_0581 + 19678266-19678949
          Length = 227

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 14/50 (28%), Positives = 30/50 (60%)
 Frame = -2

Query: 438 VPAALNFTI*LLQYPSATKISPVLAIATDVGMQNKTRCLNGRPAVKGSPI 289
           +PAAL+ ++ L +  S     P++   +++ ++ K R ++ +P+  GSPI
Sbjct: 58  LPAALSSSMALPRRSSHISSRPIIHCRSELAVEAKGRVVSKKPSGSGSPI 107


>04_01_0348 + 4563391-4563689,4563965-4564145,4564186-4564467
          Length = 253

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 332 VLFCMPTSVAIASTGEIFVADGYCNNQIVKFNAAGTLLLTIPAY 463
           V+ C  + VAI S GEI +  G   + +    A+ +LL+  PA+
Sbjct: 34  VVHCRDSFVAIGSLGEISMFSGNNTDGVALLTASPSLLMPPPAH 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,612,338
Number of Sequences: 37544
Number of extensions: 503120
Number of successful extensions: 1039
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)