Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00891
(838 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41435| Best HMM Match : Cu2_monoox_C (HMM E-Value=4e-36) 67 2e-11
SB_42994| Best HMM Match : NHL (HMM E-Value=8.4e-34) 57 2e-08
SB_27124| Best HMM Match : NHL (HMM E-Value=6.4e-17) 33 0.22
SB_24569| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.29
SB_47830| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_57227| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_26444| Best HMM Match : CAP_GLY (HMM E-Value=1.2e-23) 30 2.0
SB_52655| Best HMM Match : MFS_1 (HMM E-Value=0) 29 4.7
SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_29120| Best HMM Match : 7tm_1 (HMM E-Value=1e-07) 29 6.2
SB_21212| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_28652| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
>SB_41435| Best HMM Match : Cu2_monoox_C (HMM E-Value=4e-36)
Length = 821
Score = 66.9 bits (156), Expect = 2e-11
Identities = 34/82 (41%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Frame = +3
Query: 9 GQPVIFHRADRVWDENTFNESNAYQNFD-KGPIVEDTILVLDPGSGSVLHSWGAYI-FYM 182
G I HRA R WD NTF E+ + + P+ + +L L+P S V+ G+ F +
Sbjct: 195 GNVTILHRAGRPWDGNTFYENTDVLRKELREPLKTNVLLWLNPQSELVMREEGSKAGFVL 254
Query: 183 PHGLTLDHHDNVWVTDVAKHQV 248
PHGL+ D H N+W TDV HQV
Sbjct: 255 PHGLSFDQHGNMWATDVGLHQV 276
Score = 52.4 bits (120), Expect = 4e-07
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +2
Query: 278 PTLTIGEPFTAGLPF-RHRVLFCMPTSVAIASTGEIFVADGYCNNQIVKFNAAG 436
P++ +G + G ++ FC PT VA+ G IF+ADGYCN ++VK + G
Sbjct: 529 PSMVLGTKYEPGSTLSEEKIQFCKPTDVAVDEEGNIFIADGYCNQRVVKLDKNG 582
>SB_42994| Best HMM Match : NHL (HMM E-Value=8.4e-34)
Length = 750
Score = 57.2 bits (132), Expect = 2e-08
Identities = 26/56 (46%), Positives = 35/56 (62%)
Frame = +2
Query: 278 PTLTIGEPFTAGLPFRHRVLFCMPTSVAIASTGEIFVADGYCNNQIVKFNAAGTLL 445
P L +GE G +H FC P VAI +TG +VADGYCN++++KF+ G LL
Sbjct: 185 PVLVLGEMLRPGSDDKH---FCQPNDVAIETTGVFYVADGYCNSRVMKFSPEGKLL 237
Score = 56.8 bits (131), Expect = 2e-08
Identities = 21/27 (77%), Positives = 24/27 (88%)
Frame = +3
Query: 174 FYMPHGLTLDHHDNVWVTDVAKHQVYK 254
FYMPHGLT+DH DN W+TDVA HQV+K
Sbjct: 150 FYMPHGLTIDHEDNTWITDVALHQVHK 176
Score = 29.1 bits (62), Expect = 4.7
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Frame = +3
Query: 636 VFAV--TSH-GDTIYAVNGPT---SQNIAVRGFTVNAVYGNILDTW 755
V+AV SH G ++ VNG + + IAV+GFTV G +L W
Sbjct: 306 VYAVDFNSHDGGVLHVVNGESVFGGKRIAVQGFTVRTSDGALLGKW 351
Score = 28.3 bits (60), Expect = 8.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 754 GNDTGFTNPHSLAVTRNGSHLYVSEIGP 837
G FT PH +A + + + L+V++ GP
Sbjct: 353 GQGNFFTQPHDIASSADNNELFVTQTGP 380
>SB_27124| Best HMM Match : NHL (HMM E-Value=6.4e-17)
Length = 415
Score = 33.5 bits (73), Expect = 0.22
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 177 YMPHGLTLDHHDNVWVTDVAKHQVYK 254
+ PHG+T+D DN+ V D H+++K
Sbjct: 348 WQPHGVTVDKDDNILVCDTGNHRLHK 373
>SB_24569| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1660
Score = 33.1 bits (72), Expect = 0.29
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Frame = +3
Query: 57 TFNESNAYQNFDKGPIVEDTILVLDPGSGSVLHSWGAY-----IFYMPHGLTLDHHDNVW 221
T N+ + DK + D + DP + S+G F +PHG+ D DN++
Sbjct: 1448 TANDDGILERLDKSGDLVDNRIPTDPSLSRFVKSFGIAGGGDGCFNLPHGVATDPSDNIY 1507
Query: 222 VTD 230
V D
Sbjct: 1508 VAD 1510
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 335 LFCMPTSVAIASTGEIFVADGYCNNQIVKFNAA 433
L PT VA+ G ++VAD + NN+I F+ A
Sbjct: 1627 LMRFPTGVAVDKAGHLYVADTF-NNRIQVFSLA 1658
>SB_47830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 767
Score = 31.1 bits (67), Expect = 1.2
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = +3
Query: 111 DTILVLDPGSGSVLHSWGAY-----IFYMPHGLTLDHHDNVWVTDVAKHQV 248
DTI V DP SG L+S G F P GL +D D ++V D H+V
Sbjct: 662 DTIQVFDP-SGDYLYSVGGTGHGEGRFREPRGLHVDARDRLFVCDSGNHRV 711
>SB_57227| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 712
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Frame = +3
Query: 639 FAVTSHGDTIYAVNGPTSQNIAVRGFTVNAVYGNILDTWERHWIHEPTLAG---GYKERI 809
F+ HGD + NG RG + +Y D+W+ IH+ +A YKE I
Sbjct: 605 FSANKHGDVQFIFNGDEYDPFDRRGNLIKTLYPFPGDSWKPENIHDFLVADDAQAYKETI 664
Query: 810 TSL 818
L
Sbjct: 665 QQL 667
>SB_26444| Best HMM Match : CAP_GLY (HMM E-Value=1.2e-23)
Length = 1024
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/73 (24%), Positives = 30/73 (41%)
Frame = +3
Query: 564 EAGLKSYADPLEPPTTVEDPTLGRVFAVTSHGDTIYAVNGPTSQNIAVRGFTVNAVYGNI 743
E L+ + PT ++DPT A+ T ++G QN V + V +
Sbjct: 160 EPALEDVYKLMREPTNIKDPT---AVAIVREKATKTVMDGDGHQNTLVDNYKVIRHIPKL 216
Query: 744 LDTWERHWIHEPT 782
+ TW ++ PT
Sbjct: 217 MSTWVTKYLKRPT 229
>SB_52655| Best HMM Match : MFS_1 (HMM E-Value=0)
Length = 839
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 281 TLTIGEPFTAGLPFRHRVLFCMPTSVAIASTGEIFVADGYC 403
TLT+ E TA + + H V +CM + + E+F+ G C
Sbjct: 224 TLTL-ETLTAFVSYVHLVKYCMESGIPEKDASELFIFIGAC 263
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 281 TLTIGEPFTAGLPFRHRVLFCMPTSVAIASTGEIFVADGYC 403
TLT+ E TA + + H V +CM + + E+F+ G C
Sbjct: 635 TLTL-ETLTAFVSYVHLVKYCMESGIPEKDASELFIFIGAC 674
>SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1712
Score = 28.7 bits (61), Expect = 6.2
Identities = 10/25 (40%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +3
Query: 177 YMPHGLTLDHHD-NVWVTDVAKHQV 248
+ P+GLT+DH+D ++ TD +H +
Sbjct: 324 FWPNGLTIDHNDKRIYWTDAKQHHI 348
>SB_29120| Best HMM Match : 7tm_1 (HMM E-Value=1e-07)
Length = 298
Score = 28.7 bits (61), Expect = 6.2
Identities = 18/49 (36%), Positives = 21/49 (42%)
Frame = +2
Query: 260 PSNHRYPTLTIGEPFTAGLPFRHRVLFCMPTSVAIASTGEIFVADGYCN 406
PSN + P L +G TAGL L P +A GE F CN
Sbjct: 43 PSNKKIPHLLVGALSTAGLGI---ALCSYPPFIASRFVGEWFYGASVCN 88
>SB_21212| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 249
Score = 28.7 bits (61), Expect = 6.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 400 LQ*SNSKIQCRWDSIADDSSLFR 468
+Q S S++QC W S + DS L R
Sbjct: 114 IQVSESRLQCSWPSFSGDSGLMR 136
>SB_28652| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 331
Score = 28.3 bits (60), Expect = 8.2
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Frame = -3
Query: 833 PISET*RCDPFLVTASECGFVNPVSFPSIQNVPVNS-------VNSKASDSNIL*RGTVH 675
P+S+ C LV + GF P+ +VP+N +N D+N+L G V+
Sbjct: 68 PVSKA--CKHGLVVLAIPGFDPPIDITIFTDVPLNPGPVAAARINKNLDDNNLLVVGHVN 125
Query: 674 SVNSITMRSHS 642
+++ + +HS
Sbjct: 126 DPSAVHLHNHS 136
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,447,665
Number of Sequences: 59808
Number of extensions: 582359
Number of successful extensions: 1258
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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