Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00891
         (838 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88175-5|AAB42278.2|  350|Caenorhabditis elegans Hypothetical pr...    85   6e-17
U80438-6|AAB37637.2|  663|Caenorhabditis elegans Hypothetical pr...    60   3e-09
AC024790-8|AAF60634.1|   91|Caenorhabditis elegans Hypothetical ...    31   1.3  
L14324-3|AAA28185.1|  851|Caenorhabditis elegans Abnormal nucleo...    29   3.1  
AF047027-1|AAC14263.1|  851|Caenorhabditis elegans B box zinc fi...    29   3.1  

>U88175-5|AAB42278.2|  350|Caenorhabditis elegans Hypothetical
           protein F21F3.1 protein.
          Length = 350

 Score = 85.0 bits (201), Expect = 6e-17
 Identities = 40/83 (48%), Positives = 54/83 (65%)
 Frame = +3

Query: 9   GQPVIFHRADRVWDENTFNESNAYQNFDKGPIVEDTILVLDPGSGSVLHSWGAYIFYMPH 188
           G  V FHR+ RVWDE +FN+   + N D G I   TI ++      V+  +GA +FYMPH
Sbjct: 71  GHIVAFHRSGRVWDEKSFNDHETF-NKDLGVINNKTIAIISREK-KVIDEFGAGLFYMPH 128

Query: 189 GLTLDHHDNVWVTDVAKHQVYKI 257
           GLT+D++ + WVTDV  HQV+KI
Sbjct: 129 GLTIDNNGDYWVTDVGSHQVHKI 151



 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 33/78 (42%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
 Frame = +2

Query: 284 LTIGEPFTAGLPFRHRVLFCMPTSVAIASTGEIFVADGYCNNQIVKFNAAGTLLLTIPAY 463
           +++GE    G    H   FC PT VA+A  G IFVADGYCN++I+KF+A G L+  I A 
Sbjct: 160 MSLGEKMVPGEDQAH---FCKPTDVAVAKNGHIFVADGYCNSRILKFDAKGNLMAQINAA 216

Query: 464 SD---TWSLNLPHSVTLL 508
           ++        +PHS++L+
Sbjct: 217 TEENQPSEFVVPHSLSLI 234



 Score = 29.5 bits (63), Expect = 3.1
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +1

Query: 514 LDLVCVADRENMRIVC 561
           +++VCVADREN R+ C
Sbjct: 237 MNIVCVADRENQRVQC 252


>U80438-6|AAB37637.2|  663|Caenorhabditis elegans Hypothetical
           protein T19B4.1 protein.
          Length = 663

 Score = 59.7 bits (138), Expect = 3e-09
 Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
 Frame = +3

Query: 12  QPVIFHRADRVWDENTFNESNAYQNFDKGPIVEDTILVLD-PGSGSVLH-SWGAYIFYMP 185
           Q ++F RA RVWD +TF+  N     DK PI +  ILV+   G+ + L    G   FY+P
Sbjct: 370 QLLVFQRAGRVWDASTFDNYNIL--LDKKPIADPVILVISYSGNQTKLERKLGGGQFYLP 427

Query: 186 HGLTLDHHDNVWVTDVAKHQVYKIRL 263
           HG+ +D    V+ TDV  H V K ++
Sbjct: 428 HGIYVDKDGFVYTTDVGSHTVAKWKI 453



 Score = 37.5 bits (83), Expect = 0.012
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = +2

Query: 287 TIGEPFTAGLPFRHRVLFCMPTSVAIASTGEIFVADGYCNNQIVKFNAAGTLL--LTIPA 460
           T GE    G    H   +C PT +      +++V DGYCN+++V  +  G  +    +P 
Sbjct: 463 TSGELLMPGSDQHH---YCKPTGITRVED-QLYVTDGYCNSRVVVLDLNGKRIRQFGLPG 518

Query: 461 YSDTWSLNLPHSV 499
             D    NLPH +
Sbjct: 519 -EDAGQFNLPHDI 530


>AC024790-8|AAF60634.1|   91|Caenorhabditis elegans Hypothetical
           protein Y47D7A.9 protein.
          Length = 91

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
 Frame = -3

Query: 803 FLVTASECGF----VNPVSFPSIQNVPVNSVNSKASDSNIL*RGTVHSVNSITMRSHSK- 639
           FLV  ++CG+      P S+P   + P  SV S +S SN    G+V + +++  R  +K 
Sbjct: 10  FLVVLAQCGYPVPDAYPASYPVAPSYPSASVYSASSISNS--EGSVDTESNVEFRKRAKA 67

Query: 638 HPAQSGIFNCRRRL*RIR 585
              Q+  F+ RR L  IR
Sbjct: 68  RTVQNRKFH-RRALQPIR 84


>L14324-3|AAA28185.1|  851|Caenorhabditis elegans Abnormal nucleoli
           protein 1 protein.
          Length = 851

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 347 PTSVAIASTGEIFVADGYCNNQIVKFNAAGTLL 445
           P  V I S GE+ VAD + N  +  F+  GT++
Sbjct: 766 PIGVGINSLGEVVVADNHNNFNLTVFSQDGTMI 798


>AF047027-1|AAC14263.1|  851|Caenorhabditis elegans B box zinc
           finger protein Ncl-1 protein.
          Length = 851

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 347 PTSVAIASTGEIFVADGYCNNQIVKFNAAGTLL 445
           P  V I S GE+ VAD + N  +  F+  GT++
Sbjct: 766 PIGVGINSLGEVVVADNHNNFNLTVFSQDGTMI 798


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,098,262
Number of Sequences: 27780
Number of extensions: 430383
Number of successful extensions: 999
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)