Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00891
         (838 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    26   0.50 
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    24   2.0  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.6  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   4.6  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   6.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   6.1  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   6.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   8.1  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 25.8 bits (54), Expect = 0.50
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 726 AVYGNILDTWERHWIHEPTLA 788
           A+Y  +LD W++   H PT A
Sbjct: 866 AIYQLMLDCWQKERTHRPTFA 886


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = +3

Query: 720 VNAVYGNILDTWERHWIHEPTLAG 791
           + +VY   +D W+R W+ +  ++G
Sbjct: 122 ITSVYRIAIDEWDRLWVLDNGISG 145


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = +1

Query: 760 DTGFTNPH--SLAVTRNGSHLYV 822
           D GF   +  S+ VT NGS LYV
Sbjct: 80  DEGFDGTYQTSVVVTHNGSCLYV 102


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +3

Query: 21  IFHRADRVWDENTFNESNAYQNFDKGPIVEDTILVLDPGSGSVLHS 158
           I+ ++D +W  +    ++    FD+  I   T LV   GS S + S
Sbjct: 117 IYVKSDDIWVPDISVYNSGDMTFDQTGIPPTTCLVFSSGSVSCVPS 162


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 522 GMRGR*RKYEDRVPEAGLKSYADPLEPPTTVEDPTLG 632
           GMR +   +   + E+  KSY  PL    T++D   G
Sbjct: 615 GMRYKMFFFLSSMDESNTKSYEIPLYGKMTLDDKVFG 651


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 522 GMRGR*RKYEDRVPEAGLKSYADPLEPPTTVEDPTLG 632
           GMR +   +   + E+  KSY  PL    T++D   G
Sbjct: 615 GMRYKMFFFLSSMDESNTKSYEIPLYGKMTLDDKVFG 651


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 48  DENTFNESNAYQNFDKGPIVEDT 116
           +E+ FN+ N +Q  DK   +E+T
Sbjct: 56  NESEFNDENYWQCNDKKTDIEET 78


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = +2

Query: 479 LNLPHSVTLLNIWIWYAWPIEK 544
           LNL   +   N+W+ + W   K
Sbjct: 60  LNLKDQILTTNVWLEHEWQDHK 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,086
Number of Sequences: 438
Number of extensions: 5768
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)