Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00891
         (838 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76020.1 68414.m08826 expressed protein                             32   0.54 
At1g19450.1 68414.m02423 integral membrane protein, putative / s...    28   8.8  

>At1g76020.1 68414.m08826 expressed protein
          Length = 225

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 132 PGSGSVLHSWGAYIFYMPHGLTLDHHDNVWVTDVAKHQV 248
           P     LH +G+ +  + H L L +HDN +VT  A H V
Sbjct: 61  PPLKQALHHYGSRVALLLHLLPLPYHDNAYVTSRALHIV 99


>At1g19450.1 68414.m02423 integral membrane protein, putative /
           sugar transporter family protein similar to GB:U43629
           GI:1209756 integral membrane protein from [Beta
           vulgaris]; contains Pfam profile PF00083: major
           facilitator superfamily protein; contains TIGRfam
           TIGR00879: Sugar transporter
          Length = 488

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +3

Query: 627 LGRVFAVTSHGDTIYAVNGPTSQNIAVRGFTVNAVYGNILDTW 755
           LG +  V  +  TI+   G TS N+A  G  V  V    + TW
Sbjct: 297 LGGINGVLFYSSTIFESAGVTSSNVATFGVGVVQVVATGIATW 339


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,902,838
Number of Sequences: 28952
Number of extensions: 396779
Number of successful extensions: 878
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1931371200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)