Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00888
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        29   0.95 
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    27   2.2  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    26   5.0  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     25   8.8  

>SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 362 NKTQCSFQCDFRQRSNFKKKPSEKSHHDD 276
           NK  C  QCD+ + +N       +SH DD
Sbjct: 56  NKVLCCSQCDWHEPANVYSIEQRRSHDDD 84


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 331 FDNAAISKKNRRKKVTMTTKQ 269
           F+N  +S K RRKK+T  TK+
Sbjct: 590 FENYKVSPKGRRKKITKHTKK 610


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 611 SKNTSNFKSIEDVNVRKEHPIRTDHVCC 528
           S+N     S  D   R  HP+R D +CC
Sbjct: 318 SRNNFLLSSSMDKTARLWHPVRKDCLCC 345


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/24 (37%), Positives = 19/24 (79%)
 Frame = +2

Query: 80  GLEREYFLVAVSLSNMVTI*FFFI 151
           G+++  F +AV ++++VTI FF++
Sbjct: 862 GIQQVTFFLAVGMADIVTINFFYL 885


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,087,953
Number of Sequences: 5004
Number of extensions: 64384
Number of successful extensions: 131
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)