Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00888
         (755 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          24   1.8  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      24   1.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   7.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.4  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 290 FFPTVFF*NCCVVENRTEKSTEFYYKHHYLSSI 388
           F+ T+ + N      R   S+  YYK+ YL+ I
Sbjct: 297 FYSTIMYSNGVTFPQRNRFSSLPYYKYKYLNVI 329


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 290 FFPTVFF*NCCVVENRTEKSTEFYYKHHYLSSI 388
           F+ T+ + N      R   S+  YYK+ YL+ I
Sbjct: 297 FYSTIMYSNGVTFPQRNRFSSLPYYKYKYLNVI 329


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -3

Query: 183 FKTDACV*FYPIKKNYM 133
           ++TD CV +YP +K ++
Sbjct: 715 YETDPCVRYYPRRKEWL 731


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 63  SNAEKSVSKENTFWSRCPCLIW*PYNFFL 149
           S++  S S+EN FW   P L   P N  L
Sbjct: 374 SSSSISSSEENDFWQPKPTLEDAPQNSLL 402


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 542 DHVCCSVSNINCTAHLAS 489
           DH       +NCT H+AS
Sbjct: 162 DHTWWPYDILNCTIHIAS 179


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -3

Query: 576 CECKKRAPDTHRP 538
           C C ++ P  HRP
Sbjct: 104 CVCMRKCPRRHRP 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,881
Number of Sequences: 438
Number of extensions: 4543
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)