Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00886
         (678 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3FQG5 Cluster: Serine/threonine kinase-1; n=2; Cryptos...    36   0.69 
UniRef50_A1RZQ2 Cluster: Ankyrin; n=1; Thermofilum pendens Hrk 5...    35   2.1  
UniRef50_Q69Z33 Cluster: MKIAA2018 protein; n=3; Murinae|Rep: MK...    34   2.8  
UniRef50_Q95337 Cluster: Involucrin; n=11; Eutheria|Rep: Involuc...    34   2.8  
UniRef50_P09975 Cluster: Protein ycf2; n=2; cellular organisms|R...    34   3.7  
UniRef50_Q7RKS0 Cluster: Homeobox-containing protein; n=5; Plasm...    33   4.8  
UniRef50_O74205 Cluster: Transcription factor TOXE; n=1; Cochlio...    33   8.4  

>UniRef50_A3FQG5 Cluster: Serine/threonine kinase-1; n=2;
           Cryptosporidium|Rep: Serine/threonine kinase-1 -
           Cryptosporidium parvum Iowa II
          Length = 652

 Score = 36.3 bits (80), Expect = 0.69
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -1

Query: 243 NYDSQNCSSTTVSNYDSHNYS-KMAYNLTLSHNSFHRMRNSFHYYRIYD 100
           N ++ NC +   +N+D  NY  K  YN+ L   + +   NS +Y++ YD
Sbjct: 141 NINTNNCDNNNDNNHDITNYGLKPGYNIMLHSKNVNNNINSNYYHKYYD 189


>UniRef50_A1RZQ2 Cluster: Ankyrin; n=1; Thermofilum pendens Hrk
           5|Rep: Ankyrin - Thermofilum pendens (strain Hrk 5)
          Length = 870

 Score = 34.7 bits (76), Expect = 2.1
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +3

Query: 261 AVPEVSRAILHLDQDCQDPEVNQVIPHHGSGHQAREVSRAI-LHLDQDCQDPEVNQVILH 437
           A  E  R  LH   +   PEV +++  HG+   AR  S    LHL    +D E  +++L 
Sbjct: 387 AKDEYGRTPLHWAAERGCPEVVELLLEHGADPNARNDSGMTPLHLAATVKDTEAAKLLLE 446

Query: 438 HGSGHQALE 464
           HG+   A E
Sbjct: 447 HGADPNAEE 455


>UniRef50_Q69Z33 Cluster: MKIAA2018 protein; n=3; Murinae|Rep:
           MKIAA2018 protein - Mus musculus (Mouse)
          Length = 1200

 Score = 34.3 bits (75), Expect = 2.8
 Identities = 20/69 (28%), Positives = 32/69 (46%)
 Frame = +3

Query: 291 HLDQDCQDPEVNQVIPHHGSGHQAREVSRAILHLDQDCQDPEVNQVILHHGSGHQALEVN 470
           H   D   P+ +Q  PHH    Q  +   A    ++ C++P  N+   HH   H    +N
Sbjct: 537 HHGTDQSRPKSSQPHPHHQQMQQQLQQHFASSQPEKSCENPSTNRG--HH--SHPQNHLN 592

Query: 471 RAILHQYRD 497
           + +LHQ +D
Sbjct: 593 QDVLHQQQD 601


>UniRef50_Q95337 Cluster: Involucrin; n=11; Eutheria|Rep: Involucrin
           - Tupaia glis (Tree shrew)
          Length = 400

 Score = 34.3 bits (75), Expect = 2.8
 Identities = 24/72 (33%), Positives = 34/72 (47%)
 Frame = +3

Query: 288 LHLDQDCQDPEVNQVIPHHGSGHQAREVSRAILHLDQDCQDPEVNQVILHHGSGHQALEV 467
           LHL Q  Q     Q + H G   Q +E     LHL+Q  Q+P+  +  LH G   +A E 
Sbjct: 135 LHLGQHQQQTSQEQKL-HLGQQQQHQESQEQKLHLEQQQQEPQKQE--LHLGQ-QEAQEE 190

Query: 468 NRAILHQYRDCQ 503
              +  Q ++CQ
Sbjct: 191 ELHLKQQQQECQ 202


>UniRef50_P09975 Cluster: Protein ycf2; n=2; cellular organisms|Rep:
            Protein ycf2 - Marchantia polymorpha (Liverwort)
          Length = 2136

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 23/86 (26%), Positives = 42/86 (48%)
 Frame = -2

Query: 521  LGLLQILTIPILMKDSSVYFQSLMTRTMMKNNLVYFRILTILIQMKDSSAYFPSLMTRTM 342
            L  +  L  P L  ++   F  L  +T+  NNL+Y R+L I ++ K +      + +   
Sbjct: 879  LTFIDFLQDPELNYNNRFIFH-LEKKTIKNNNLLYLRLLKIFLKDKRNFLLINEIKSFIE 937

Query: 341  MRNNLVYFRILTILIQMKDSSAYFRN 264
             +NNL     L+ ++ +K+S  +F N
Sbjct: 938  KKNNLFIKSQLSNVLLVKNSYKFFDN 963


>UniRef50_Q7RKS0 Cluster: Homeobox-containing protein; n=5;
           Plasmodium (Vinckeia)|Rep: Homeobox-containing protein -
           Plasmodium yoelii yoelii
          Length = 387

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = -1

Query: 240 YDSQNCSSTTVSNYDSHNYSKMAYNLTLSHNSFHRMRNS 124
           Y S+NC + +  N ++HNYS++  N+  + N +   +N+
Sbjct: 190 YFSENCKNNSYENVNTHNYSRVMNNIKSTENIYIPHKNN 228


>UniRef50_O74205 Cluster: Transcription factor TOXE; n=1;
           Cochliobolus carbonum|Rep: Transcription factor TOXE -
           Cochliobolus carbonum (Bipolaris zeicola)
          Length = 441

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = +3

Query: 339 HHGSGHQAREVSRAILHLDQD--CQDPEVNQVILHHGSGHQALEVNRAILHQYRDCQDLK 512
           H   G +   +  A+L+L  +    D E N  +LH      +L + R +L +Y+ C++LK
Sbjct: 328 HRAVGRRELHMVEALLNLGAEMLATDHEGNS-LLHIAVKTNSLSITRLLLERYKSCRELK 386

Query: 513 *AEL 524
            A+L
Sbjct: 387 DAQL 390


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 443,951,412
Number of Sequences: 1657284
Number of extensions: 6929779
Number of successful extensions: 20607
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20515
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)