Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00886
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3...    27   3.3  
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces...    27   3.3  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    26   5.8  
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    26   5.8  

>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 449

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 213 TVSNYDSHNYSKMAYNLTLSHNSFHRMRNSFHYY 112
           ++SNY  H Y  +  N++L   S  R++ SFH Y
Sbjct: 217 SLSNYQQHLYQVLTQNVSLRFCS--RLQCSFHKY 248


>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -2

Query: 512 LQILTIPILMKDSSVYFQSLMTRTMMKNNLVYFRILTI--LIQMK 384
           L I+  P+LM    + F SLM +   + + V+F+ L +   IQ+K
Sbjct: 111 LNIINAPLLMLSFQMAFTSLMVKMYWRFSSVHFQTLRLASAIQLK 155


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +3

Query: 258 RAVPEVSRAILHLDQDCQDPEVNQVIPHHGSGHQAREVSR--AILHLDQDCQDPEVN 422
           R +PE +   + ++QDC D  +   I    + H A   SR   ++  D   QD  V+
Sbjct: 395 RNLPEYNDVPVVINQDCYDKLIKDCIDERLAKHMAHIFSRDPLVIFSDSILQDNSVS 451


>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 17  RRIYHQNGQQNYFVVPLSFVF*CIY 91
           R +YH+NG  N+    +  VF C++
Sbjct: 321 RALYHKNGTSNHRAGAVMIVFSCLF 345


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,849,571
Number of Sequences: 5004
Number of extensions: 29234
Number of successful extensions: 101
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)