Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00886
         (678 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28751| Best HMM Match : Cyclin_N (HMM E-Value=3.6e-05)              34   0.092
SB_50280| Best HMM Match : Marek_A (HMM E-Value=1.7)                   31   0.65 
SB_39109| Best HMM Match : PT (HMM E-Value=5)                          31   0.86 

>SB_28751| Best HMM Match : Cyclin_N (HMM E-Value=3.6e-05)
          Length = 223

 Score = 34.3 bits (75), Expect = 0.092
 Identities = 17/59 (28%), Positives = 31/59 (52%)
 Frame = +3

Query: 309 QDPEVNQVIPHHGSGHQAREVSRAILHLDQDCQDPEVNQVILHHGSGHQALEVNRAILH 485
           +D  + Q +P  GSG++  ++   +L + +   D E  +  L H S H+A +VN  + H
Sbjct: 165 EDGRLIQTVP--GSGYKYEDLRPCLLRMSEVLLDLENMECKLRHASNHEAADVNDQLTH 221


>SB_50280| Best HMM Match : Marek_A (HMM E-Value=1.7)
          Length = 573

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 26/116 (22%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
 Frame = +1

Query: 148 VMAQGQVISHLRVVMGVIVTHRRTRAVLGVIVT-HRRLEQFRK*AELSFIWIRIVRIRK* 324
           V   G V    RVV    +  R   ++  ++V  +R+  +      L F+ ++I  +   
Sbjct: 416 VSTGGSVFRDERVVWSCPIVLRHHASLHSILVVINRQAPKTCPLEALYFVMVKIRILSPL 475

Query: 325 TKLFLIMVRVIKLGK*AELSFIWIRIVRIRK*TKLFFIMVRVIKLWK*TELSFINI 492
             L+ +MV++  L     L F+ ++I  +     L+F+MV++  L     L F+ +
Sbjct: 476 EALYFVMVKIRVLSPLEALYFVMVKIRVLSPLEALYFVMVKIRVLSPLEALYFVMV 531


>SB_39109| Best HMM Match : PT (HMM E-Value=5)
          Length = 231

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 15/78 (19%), Positives = 35/78 (44%)
 Frame = -2

Query: 497 IPILMKDSSVYFQSLMTRTMMKNNLVYFRILTILIQMKDSSAYFPSLMTRTMMRNNLVYF 318
           + +    S  YF+S + +    ++  YF++  + +    S  YF S + +    ++  YF
Sbjct: 39  LQVASNSSRQYFKSPVLQVASTSSRQYFKLPVLQVASTSSREYFKSPVLQVASTSSREYF 98

Query: 317 RILTILIQMKDSSAYFRN 264
           +   + +    S  YF++
Sbjct: 99  KSPVLQVASTSSREYFKS 116



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
 Frame = -2

Query: 509 QILTIPILM---KDSSVYFQSLMTRTMMKNNLVYFRILTILIQMKDSSAYFPSLMTRTMM 339
           Q   +P+L      S  YF+S + +    ++  YF+   + +    S  YF S + +   
Sbjct: 64  QYFKLPVLQVASTSSREYFKSPVLQVASTSSREYFKSPVLQVASTSSREYFKSRVLQVAS 123

Query: 338 RNNLVYFRILTILIQMKDSSAYFRN 264
            ++  YF+   + +    S  YF++
Sbjct: 124 TSSREYFKSRVLQVASTSSREYFKS 148



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/78 (19%), Positives = 34/78 (43%)
 Frame = -2

Query: 497 IPILMKDSSVYFQSLMTRTMMKNNLVYFRILTILIQMKDSSAYFPSLMTRTMMRNNLVYF 318
           + +    S  YF+S + +    ++  YF+   + +    S  YF S + +    ++  YF
Sbjct: 103 LQVASTSSREYFKSRVLQVASTSSREYFKSRVLQVASTSSREYFKSRVLQVASTSSREYF 162

Query: 317 RILTILIQMKDSSAYFRN 264
           +   + +    S  YF++
Sbjct: 163 KSRVLQVASTSSREYFKS 180



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/78 (19%), Positives = 34/78 (43%)
 Frame = -2

Query: 497 IPILMKDSSVYFQSLMTRTMMKNNLVYFRILTILIQMKDSSAYFPSLMTRTMMRNNLVYF 318
           + +    S  YF+S + +    ++  YF+   + +    S  YF S + +    ++  YF
Sbjct: 119 LQVASTSSREYFKSRVLQVASTSSREYFKSRVLQVASTSSREYFKSRVLQVASTSSREYF 178

Query: 317 RILTILIQMKDSSAYFRN 264
           +   + +    S  YF++
Sbjct: 179 KSRVLQVASTSSREYFKS 196



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/78 (19%), Positives = 34/78 (43%)
 Frame = -2

Query: 497 IPILMKDSSVYFQSLMTRTMMKNNLVYFRILTILIQMKDSSAYFPSLMTRTMMRNNLVYF 318
           + +    S  YF+S + +    ++  YF+   + +    S  YF S + +    ++  YF
Sbjct: 135 LQVASTSSREYFKSRVLQVASTSSREYFKSRVLQVASTSSREYFKSRVLQVASTSSREYF 194

Query: 317 RILTILIQMKDSSAYFRN 264
           +   + +    S  YF++
Sbjct: 195 KSRVLQVASTSSREYFKS 212



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/78 (19%), Positives = 34/78 (43%)
 Frame = -2

Query: 497 IPILMKDSSVYFQSLMTRTMMKNNLVYFRILTILIQMKDSSAYFPSLMTRTMMRNNLVYF 318
           + +    S  YF+S + +    ++  YF+   + +    S  YF S + +    ++  YF
Sbjct: 151 LQVASTSSREYFKSRVLQVASTSSREYFKSRVLQVASTSSREYFKSRVLQVASTSSREYF 210

Query: 317 RILTILIQMKDSSAYFRN 264
           +   + +    S  YF++
Sbjct: 211 KSRVLQVASTSSREYFKS 228



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/78 (19%), Positives = 34/78 (43%)
 Frame = -2

Query: 497 IPILMKDSSVYFQSLMTRTMMKNNLVYFRILTILIQMKDSSAYFPSLMTRTMMRNNLVYF 318
           + +    S  YF+S + +    ++  YF+   + +    S  YF S + +    ++  YF
Sbjct: 87  LQVASTSSREYFKSPVLQVASTSSREYFKSRVLQVASTSSREYFKSRVLQVASTSSREYF 146

Query: 317 RILTILIQMKDSSAYFRN 264
           +   + +    S  YF++
Sbjct: 147 KSRVLQVASTSSREYFKS 164


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,581,274
Number of Sequences: 59808
Number of extensions: 228733
Number of successful extensions: 586
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)