Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00886
         (678 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    25   2.9  
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    24   5.1  
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            24   5.1  

>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +3

Query: 312 DPEVNQVIPHHGSGHQAREVSRAILHLDQDCQ-DPEVNQVILHHGSGHQALEVNRAILHQ 488
           D   N V+  +GSG      +   +  D+     PE  Q +LH G+G +A+     I+  
Sbjct: 24  DKRHNVVVGRNGSGKSNFFYAIQFVLSDEFTHLRPEQRQALLHEGTGPRAMSAYVEIIFD 83

Query: 489 YRD 497
             D
Sbjct: 84  NSD 86


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 195 SHNYSKMAYNLTLSHNSFHRM 133
           SH+ S +++N TLS++S  R+
Sbjct: 750 SHSLSPISFNYTLSNSSLSRV 770


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 408 DPEVNQVILHHGSGHQALEVNRAILHQY 491
           DP  N ++LHH   HQ  +  +  LH +
Sbjct: 136 DPTRNGIVLHH-QAHQQQQQQQQQLHHH 162


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 464,468
Number of Sequences: 2352
Number of extensions: 7287
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68159265
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)