Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00886
         (678 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical pr...    31   1.00 
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    28   5.3  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    28   5.3  

>Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical protein
            F52B5.3 protein.
          Length = 1425

 Score = 30.7 bits (66), Expect = 1.00
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -1

Query: 243  NYDSQNCSSTTVSNYDSHNYSKMAYNLTLSHNSFHRMRNSFHYY 112
            N  + + SS++ +++ SHNYS   YN+ L  N +      F ++
Sbjct: 1313 NMSTSHQSSSSNNHHYSHNYSYPHYNIQLPQNQYQSWTPQFDFH 1356


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
           protein 1 protein.
          Length = 4568

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 270 EVSRAILHLDQDCQDPEVNQVIPHH 344
           E   A+LHL Q+   PE+N V+  H
Sbjct: 184 EAEAALLHLQQNIDIPEINLVVNQH 208



 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 366 EVSRAILHLDQDCQDPEVNQVILHH 440
           E   A+LHL Q+   PE+N V+  H
Sbjct: 184 EAEAALLHLQQNIDIPEINLVVNQH 208


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
           protein.
          Length = 4568

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 270 EVSRAILHLDQDCQDPEVNQVIPHH 344
           E   A+LHL Q+   PE+N V+  H
Sbjct: 184 EAEAALLHLQQNIDIPEINLVVNQH 208



 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 366 EVSRAILHLDQDCQDPEVNQVILHH 440
           E   A+LHL Q+   PE+N V+  H
Sbjct: 184 EAEAALLHLQQNIDIPEINLVVNQH 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,136,893
Number of Sequences: 27780
Number of extensions: 162020
Number of successful extensions: 492
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)