Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00885
         (724 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC113462-1|AAI13463.1|  337|Homo sapiens G protein-coupled recep...    33   1.4  
BC112011-1|AAI12012.1|  337|Homo sapiens G protein-coupled recep...    33   1.4  
AJ505757-1|CAD44281.1|  337|Homo sapiens putative orphan G prote...    33   1.4  

>BC113462-1|AAI13463.1|  337|Homo sapiens G protein-coupled receptor
           26 protein.
          Length = 337

 Score = 32.7 bits (71), Expect = 1.4
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +3

Query: 18  VPCGTYLK*TNPKLFDSKR--TFSAQ*IIIIINLYPKCRNKCLLKVKNVKQIQT 173
           V C TYLK      F  KR    + Q ++++++L+P  R +CL + K  +Q  T
Sbjct: 187 VLCCTYLKVLKVARFHCKRIDVITMQTLVLLVDLHPSVRERCLEEQKRRRQRAT 240


>BC112011-1|AAI12012.1|  337|Homo sapiens G protein-coupled receptor
           26 protein.
          Length = 337

 Score = 32.7 bits (71), Expect = 1.4
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +3

Query: 18  VPCGTYLK*TNPKLFDSKR--TFSAQ*IIIIINLYPKCRNKCLLKVKNVKQIQT 173
           V C TYLK      F  KR    + Q ++++++L+P  R +CL + K  +Q  T
Sbjct: 187 VLCCTYLKVLKVARFHCKRIDVITMQTLVLLVDLHPSVRERCLEEQKRRRQRAT 240


>AJ505757-1|CAD44281.1|  337|Homo sapiens putative orphan G
           protein-coupled receptor 26 protein.
          Length = 337

 Score = 32.7 bits (71), Expect = 1.4
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +3

Query: 18  VPCGTYLK*TNPKLFDSKR--TFSAQ*IIIIINLYPKCRNKCLLKVKNVKQIQT 173
           V C TYLK      F  KR    + Q ++++++L+P  R +CL + K  +Q  T
Sbjct: 187 VLCCTYLKVLKVARFHCKRIDVITMQTLVLLVDLHPSVRERCLEEQKRRRQRAT 240


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,495,822
Number of Sequences: 237096
Number of extensions: 1019094
Number of successful extensions: 1668
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1668
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8511181328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)