Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00884
(753 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 35 0.011
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 35 0.011
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 35 0.014
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 34 0.019
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 32 0.076
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 31 0.13
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 31 0.13
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 31 0.13
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 31 0.18
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 31 0.23
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 30 0.31
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 30 0.41
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 29 0.54
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 29 0.71
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 28 1.6
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa... 27 2.2
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 27 2.2
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 27 3.8
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 27 3.8
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb... 26 5.0
SPCC1223.12c |meu10||GPI anchored cell surface protein |Schizosa... 26 5.0
SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 5.0
SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyce... 26 6.6
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 25 8.8
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 35.1 bits (77), Expect = 0.011
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 115 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVW 216
D S +YVGN+ + S EI K FSKYG + +++
Sbjct: 14 DESSTIYVGNIDSRLSDEEIIKHFSKYGQVESIF 47
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 35.1 bits (77), Expect = 0.011
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVELKT 261
+YV NL S I +FS YGN++++W+ +P A V ++
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWML-SPDNSAIVSYES 44
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 34.7 bits (76), Expect = 0.014
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 216 GSSKSARICICRIEDPRDAEDSVRGLDGTRCCGTRIRVEMS 338
GSSK C C ++P DAE ++ GLDG G ++ + +
Sbjct: 348 GSSKG--FCFCEFKNPSDAEVAISGLDGKDTYGNKLHAQFA 386
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 34.3 bits (75), Expect = 0.019
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVE 252
VYVGNL ++ +I +FSK G IR + + + P GF FVE
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVE 79
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 32.3 bits (70), Expect = 0.076
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVELKTPVML 273
VYVGN+ + + E++ F+ G++ V + +P GFA++E P ++
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLV 109
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 31.5 bits (68), Expect = 0.13
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Frame = +1
Query: 124 CKVYVGNLGTN--ASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVELKTP 264
C ++V NL N + ++E++FSK+G I++ +A P G+ FV P
Sbjct: 419 CNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHP 472
Score = 25.8 bits (54), Expect = 6.6
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEKIFSKYGN 201
+YVGNL + ++ ++F +GN
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGN 45
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 31.5 bits (68), Expect = 0.13
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Frame = +1
Query: 115 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVELKT 261
+L ++V + + + E+++IFSK+G + +V + R P GF F+ T
Sbjct: 98 NLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFST 151
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 31.5 bits (68), Expect = 0.13
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Frame = +1
Query: 109 EWDLS-CKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVELK 258
EWD + +++VGNLG + + + + FS+Y ++ V R+ GF FV K
Sbjct: 24 EWDPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFK 78
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 31.1 bits (67), Expect = 0.18
Identities = 18/65 (27%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Frame = +1
Query: 121 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWV--ARNPPGFAFVELKTPV-MLKTLFVD 291
S V++GNL ++ + EIE+ F K+G I ++ + +N F+ ++ + +++TL D
Sbjct: 298 SRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHFLNIRDAIKVVRTLSCD 357
Query: 292 LMEHA 306
H+
Sbjct: 358 PDYHS 362
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 30.7 bits (66), Expect = 0.23
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Frame = +1
Query: 115 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR--NPPG----FAFVELKT 261
+L ++YVG L ++ ++E FS++G++ N+ + P G FA++ +T
Sbjct: 2 ELEKRIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRT 56
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 30.3 bits (65), Expect = 0.31
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 127 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFA 243
+VYVGNL +E+++ + GN+ N + P G +
Sbjct: 67 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLS 105
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 29.9 bits (64), Expect = 0.41
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 252 IEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 344
+ED RDA D V G G+RI VE + G
Sbjct: 44 VEDARDARDIVNDFQGKEFMGSRIVVEPARG 74
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 29.5 bits (63), Expect = 0.54
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVELK 258
V+VGNL A + + + F G+I V + R+P GFA+++ K
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFK 319
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 29.1 bits (62), Expect = 0.71
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Frame = +1
Query: 121 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVELKTP 264
SC VYVGN+ ++ ++ IF + G +++ + + P G+ F E P
Sbjct: 4 SCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDP 56
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Frame = +1
Query: 121 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVELKTPVMLK 276
+C V+VG L N + + F +YG I V + G+ +V+ +TP K
Sbjct: 262 TCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAK 318
>SPCC4B3.12 |set9||histone lysine methyltransferase
Set9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 441
Score = 27.5 bits (58), Expect = 2.2
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Frame = -1
Query: 582 HMYTLKTISLSHCSSKICITSQYLVCCQNDC--DGRVIVNGGEKESDGELKATVVETLTG 409
H+ ++ L C +IC T+QY + + R +N GE +D L T+++
Sbjct: 96 HLKYYLSLYLPSCKFEICSTNQYFSSSKPEACVIARESINAGEDITD--LCGTIIKLSPK 153
Query: 408 RESMIG-GGDYDCVTCCGL-SLC 346
E IG G D+ + L S+C
Sbjct: 154 EERNIGIGKDFSILHSSRLDSMC 176
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/57 (26%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Frame = +1
Query: 97 SRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVE 252
S ++++ S +Y+GNL + ++ +I +FS++G ++ + R+ GFAF++
Sbjct: 22 SWHQDYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLK 78
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +1
Query: 130 VYVGNLG-TNASKYEIEKIFSKYGNIRNVWVAR--NPPGFAFV 249
++VG L N + Y + +FSKYG + + + P FAF+
Sbjct: 367 IFVGQLDPVNCTHYLLVDLFSKYGKVIDCKIIHQSKKPAFAFL 409
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEKIFSKYGNIRNV 213
+YV N + +I K+FS YGN+ +V
Sbjct: 668 LYVTNFPPTYDELDITKLFSAYGNVVDV 695
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = +1
Query: 127 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR---NPPGFAFVELKT 261
++YV N+ ++ ++E F YG + +V + + GF +V + T
Sbjct: 758 ELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTT 805
>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 516 YLVCCQNDCDGRVIVNGGEKESDGELKA 433
Y +CC N + +V GGEK + L+A
Sbjct: 292 YELCCCNKLFLKKLVEGGEKNGEAPLEA 319
>SPCC1223.12c |meu10||GPI anchored cell surface protein
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 416
Score = 26.2 bits (55), Expect = 5.0
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Frame = -1
Query: 585 FHMYTLKTISLSHCSSKICITSQYLVCCQNDCD---GRVIVNGG---EKESDGELKATVV 424
F +T ++ ++ + +C +Y++ QND D +VNG S L +
Sbjct: 10 FTSFTAWSVVIAGATPAVCGAPEYIIETQNDLDVLSNCQVVNGSIIMNTSSATSLNFNRI 69
Query: 423 ETLTG 409
ET+TG
Sbjct: 70 ETITG 74
>SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 122
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = +2
Query: 86 KLRCLATENGIFLAKCT---WATWVLMRLNMK*KKYF 187
KL +AT + IF + W+TWVL R +K +F
Sbjct: 5 KLANVATVDAIFAISSSTFLWSTWVLQRTILKRPNFF 41
>SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 498
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -1
Query: 420 TLTGRESMIGGGDYDCVTCCGLSLCDHLTFRHESWCH 310
T T + GD T + LC+ LT+R E W H
Sbjct: 11 TRTEIPNQASNGDAVPNTDAYMGLCNSLTYRFEGWRH 47
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -1
Query: 345 DHLTFRHESWCHSSVFHQVHEQSLQHHGGLQFY 247
DH ++HE C H VHE+ G L+ Y
Sbjct: 414 DHKPWKHEEHCSCHEDHSVHERP-SAKGALEDY 445
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,809,485
Number of Sequences: 5004
Number of extensions: 54767
Number of successful extensions: 182
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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