Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00884
(753 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 65 4e-11
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 65 4e-11
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 65 4e-11
Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical pr... 45 7e-05
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 43 3e-04
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 43 3e-04
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 38 0.010
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 38 0.010
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 38 0.010
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 37 0.013
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 37 0.013
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 37 0.013
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 37 0.018
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 37 0.018
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 37 0.018
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 36 0.031
U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical p... 36 0.031
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 33 0.22
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 33 0.29
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 33 0.29
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 32 0.38
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 32 0.50
U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna bi... 32 0.50
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 31 0.66
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 31 0.66
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 31 0.66
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 31 0.66
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 31 0.66
Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical p... 31 0.88
Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical pr... 31 1.2
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 30 1.5
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 30 1.5
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 30 1.5
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical pr... 29 2.7
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 29 2.7
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 29 3.5
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 29 3.5
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 29 3.5
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 29 3.5
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 29 3.5
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 29 3.5
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 29 3.5
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical p... 29 4.7
Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical pr... 29 4.7
U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle orienta... 29 4.7
AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein. 29 4.7
U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya bind... 28 6.2
Z78537-1|CAB01719.1| 182|Caenorhabditis elegans Hypothetical pr... 28 8.2
AF026215-6|AAB71325.1| 516|Caenorhabditis elegans Hypothetical ... 28 8.2
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 28 8.2
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 28 8.2
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 28 8.2
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 65.3 bits (152), Expect = 4e-11
Identities = 27/45 (60%), Positives = 35/45 (77%)
Frame = +1
Query: 118 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVE 252
+ KVYVG L ++A+ E+E+IF ++G IR VWVAR PPGFAFVE
Sbjct: 1 MDAKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVE 45
Score = 47.6 bits (108), Expect = 9e-06
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = +3
Query: 255 EDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 344
+D RDAED+VR LDG+R CG R RVE+S G
Sbjct: 47 DDVRDAEDAVRALDGSRICGVRARVELSTG 76
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 65.3 bits (152), Expect = 4e-11
Identities = 27/45 (60%), Positives = 35/45 (77%)
Frame = +1
Query: 118 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVE 252
+ KVYVG L ++A+ E+E+IF ++G IR VWVAR PPGFAFVE
Sbjct: 1 MDAKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVE 45
Score = 47.6 bits (108), Expect = 9e-06
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = +3
Query: 255 EDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 344
+D RDAED+VR LDG+R CG R RVE+S G
Sbjct: 47 DDVRDAEDAVRALDGSRICGVRARVELSTG 76
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 65.3 bits (152), Expect = 4e-11
Identities = 27/45 (60%), Positives = 35/45 (77%)
Frame = +1
Query: 118 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVE 252
+ KVYVG L ++A+ E+E+IF ++G IR VWVAR PPGFAFVE
Sbjct: 1 MDAKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVE 45
Score = 47.6 bits (108), Expect = 9e-06
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = +3
Query: 255 EDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 344
+D RDAED+VR LDG+R CG R RVE+S G
Sbjct: 47 DDVRDAEDAVRALDGSRICGVRARVELSTG 76
>Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical
protein Y57G11A.5 protein.
Length = 121
Score = 44.8 bits (101), Expect = 7e-05
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 11/58 (18%)
Frame = +1
Query: 127 KVYVGNLGTNASKYE-----------IEKIFSKYGNIRNVWVARNPPGFAFVELKTPV 267
+VYVGN+ +A++ E IE +FS G I+++W+A+ PPGFAFV K V
Sbjct: 18 QVYVGNMPFDATEKELNNDALTIYDAIEAVFSVMGPIKSIWMAKRPPGFAFVTFKRTV 75
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 42.7 bits (96), Expect = 3e-04
Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = +1
Query: 127 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-ARNPPGFAFVELK 258
KVYVGNL + + E+E IF KYG I+ V + + P FAFVE +
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFE 54
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/42 (45%), Positives = 22/42 (52%)
Frame = +3
Query: 219 SSKSARICICRIEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 344
S + ED RDAED+VR DG G RIRVE + G
Sbjct: 42 SGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTRG 83
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 42.7 bits (96), Expect = 3e-04
Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = +1
Query: 127 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-ARNPPGFAFVELK 258
KVYVGNL + + E+E IF KYG I+ V + + P FAFVE +
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFE 54
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/42 (45%), Positives = 22/42 (52%)
Frame = +3
Query: 219 SSKSARICICRIEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 344
S + ED RDAED+VR DG G RIRVE + G
Sbjct: 42 SGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTRG 83
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 37.5 bits (83), Expect = 0.010
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEKIFSKYGNIRN---VWVARNPPGFAFVELKTPVMLKT 279
VYV N G + +K +EK+F+K+GNI + + V GF FV P +T
Sbjct: 215 VYVKNFGDHYNKETLEKVFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAET 267
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/46 (34%), Positives = 30/46 (65%)
Frame = +1
Query: 124 CKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVELKT 261
C+++VGNL + E++++FS +G+I +++ GFAF+ L T
Sbjct: 116 CRLFVGNLPNEVKETELKELFSPHGDIAECYLSGK--GFAFLRLDT 159
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/46 (34%), Positives = 30/46 (65%)
Frame = +1
Query: 124 CKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVELKT 261
C+++VGNL + E++++FS +G+I +++ GFAF+ L T
Sbjct: 116 CRLFVGNLPNEVKETELKELFSPHGDIAECYLSGK--GFAFLRLDT 159
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 37.1 bits (82), Expect = 0.013
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEKIFSKYGNIRN---VWVARNPPGFAFVELKTPVMLKT 279
VYV N G + +K +EK+F+K+GNI + + V GF FV P +T
Sbjct: 155 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAET 207
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 37.1 bits (82), Expect = 0.013
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEKIFSKYGNIRN---VWVARNPPGFAFVELKTPVMLKT 279
VYV N G + +K +EK+F+K+GNI + + V GF FV P +T
Sbjct: 152 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAET 204
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 37.1 bits (82), Expect = 0.013
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEKIFSKYGNIRN---VWVARNPPGFAFVELKTPVMLKT 279
VYV N G + +K +EK+F+K+GNI + + V GF FV P +T
Sbjct: 215 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAET 267
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 36.7 bits (81), Expect = 0.018
Identities = 18/45 (40%), Positives = 29/45 (64%)
Frame = +1
Query: 118 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVE 252
++ ++Y+G L + S+ +IE F YG IR+V + +N GF FVE
Sbjct: 1 MAARIYIGRLTSRVSEKDIEHFFRGYGQIRDV-LLKN--GFGFVE 42
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 255 EDPRDAEDSVRGLDGTRCCGTRIRVEMS 338
+D RDAED+V L+G G R+ ++ S
Sbjct: 44 DDKRDAEDAVHDLNGKELGGERVILDYS 71
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 36.7 bits (81), Expect = 0.018
Identities = 18/45 (40%), Positives = 29/45 (64%)
Frame = +1
Query: 118 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVE 252
++ ++Y+G L + S+ +IE F YG IR+V + +N GF FVE
Sbjct: 1 MAARIYIGRLTSRVSEKDIEHFFRGYGQIRDV-LLKN--GFGFVE 42
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 255 EDPRDAEDSVRGLDGTRCCGTRIRVEMS 338
+D RDAED+V L+G G R+ ++ S
Sbjct: 44 DDKRDAEDAVHDLNGKELGGERVILDYS 71
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 36.7 bits (81), Expect = 0.018
Identities = 18/45 (40%), Positives = 29/45 (64%)
Frame = +1
Query: 118 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVE 252
++ ++Y+G L + S+ +IE F YG IR+V + +N GF FVE
Sbjct: 1 MAARIYIGRLTSRVSEKDIEHFFRGYGQIRDV-LLKN--GFGFVE 42
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 255 EDPRDAEDSVRGLDGTRCCGTRIRVEMS 338
+D RDAED+V L+G G R+ ++ S
Sbjct: 44 DDKRDAEDAVHDLNGKELGGERVILDYS 71
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 35.9 bits (79), Expect = 0.031
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Frame = +1
Query: 121 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVA-----RNPPGFAFVELKT 261
SC +YVGNL + ++ ++F + G++R V + + P GF FVE T
Sbjct: 36 SCTLYVGNLSYYTKEDQVYELFGRAGDVRRVIMGLDRFKKTPCGFCFVEYYT 87
>U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical
protein F25B5.7b protein.
Length = 165
Score = 35.9 bits (79), Expect = 0.031
Identities = 15/44 (34%), Positives = 29/44 (65%)
Frame = +1
Query: 124 CKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVEL 255
C+++VGNL + E++++FS +G+I +++ GFAF+ L
Sbjct: 116 CRLFVGNLPNEVKETELKELFSPHGDIAECYLSGK--GFAFLRL 157
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 33.1 bits (72), Expect = 0.22
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVE 252
V+VGN+ + S+ I IFSK GN+ ++ + + P G+ F+E
Sbjct: 20 VFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIE 65
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 32.7 bits (71), Expect = 0.29
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVE 252
VYVGN+ ++ EI F+ G++ NV + + P GFAFVE
Sbjct: 8 VYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVE 53
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 32.7 bits (71), Expect = 0.29
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +1
Query: 127 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVELK 258
+VY+G L AS ++E F YG + +V + +N GF FV+ +
Sbjct: 3 RVYIGRLPNRASDRDVEHFFRGYGKLSDV-IMKN--GFGFVDFQ 43
Score = 31.5 bits (68), Expect = 0.66
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 255 EDPRDAEDSVRGLDGTRCCGTRIRVE 332
+D RDA+D+V L+G CG R+ +E
Sbjct: 43 QDQRDADDAVHDLNGKELCGERVILE 68
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 32.3 bits (70), Expect = 0.38
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVE 252
VYVGN ++ ++ FS+ GN+ NV + P GFAFVE
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVE 51
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 31.9 bits (69), Expect = 0.50
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFVE 252
VYVGN+ A+ EIE+ F G++ V + + +P GFA+VE
Sbjct: 80 VYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVE 125
>U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 2 protein.
Length = 206
Score = 31.9 bits (69), Expect = 0.50
Identities = 13/44 (29%), Positives = 27/44 (61%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVELKT 261
++ NL +A+ +E +F+++ ++++ + N PG AFVE T
Sbjct: 134 LFCTNLPDSATAEMLEIMFNQFAGLKDIRMVPNRPGIAFVEFDT 177
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 31.5 bits (68), Expect = 0.66
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +1
Query: 127 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVELK 258
++Y+G + NA + ++E+ YG I N+ + GFAFV+ +
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKY---GFAFVDFE 43
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +3
Query: 255 EDPRDAEDSVRGLDGTRCCGTRIR--VEMSNG 344
ED RDAED+ LDG G+ +R VEM+ G
Sbjct: 43 EDSRDAEDACHDLDGKTMEGSSMRLVVEMARG 74
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 31.5 bits (68), Expect = 0.66
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +1
Query: 127 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVELK 258
++Y+G + NA + ++E+ YG I N+ + GFAFV+ +
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKY---GFAFVDFE 43
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +3
Query: 255 EDPRDAEDSVRGLDGTRCCGTRIR--VEMSNG 344
ED RDAED+ LDG G+ +R VEM+ G
Sbjct: 43 EDSRDAEDACHDLDGKTMEGSSMRLVVEMARG 74
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 31.5 bits (68), Expect = 0.66
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +1
Query: 127 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVELK 258
++Y+G + NA + ++E+ YG I N+ + GFAFV+ +
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKY---GFAFVDFE 43
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +3
Query: 255 EDPRDAEDSVRGLDGTRCCGTRIR--VEMSNG 344
ED RDAED+ LDG G+ +R VEM+ G
Sbjct: 43 EDSRDAEDACHDLDGKTMEGSSMRLVVEMARG 74
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 31.5 bits (68), Expect = 0.66
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Frame = +1
Query: 91 KMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFV 249
K S ++ + S +Y+G L S+ ++ +FS+YG + N+ + R+ GFAF+
Sbjct: 27 KKSWHQTYKDSAWIYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFL 84
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 31.5 bits (68), Expect = 0.66
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +1
Query: 127 KVYVGNLGTNASKYEIEKIFSKYGNIRNV 213
+V + NL N K +E+IFS YG I+NV
Sbjct: 134 RVVIKNLSRNVLKTHLEEIFSIYGAIKNV 162
>Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical
protein B0035.12 protein.
Length = 836
Score = 31.1 bits (67), Expect = 0.88
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = +1
Query: 127 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVELKT 261
KV+V N+ A+ E++ +FSK+G + +V + P G AFV+ T
Sbjct: 684 KVFVRNVHFQATDDELKALFSKFGTVTSVRRVTHKDGKPKGIAFVDFDT 732
>Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical
protein R10E4.2b protein.
Length = 409
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Frame = +1
Query: 70 PPFSIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNV-----WVARNPP 234
PP S S + S +Y+ L N + + ++ SKYGNI + N
Sbjct: 89 PPTSQHRASSNFNTTPSSTNLYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCK 148
Query: 235 GFAFVELKTP 264
G+ FV+ ++P
Sbjct: 149 GYGFVDFESP 158
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Frame = +1
Query: 127 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFV 249
K++VG L +N + + + +S++G I ++ V R+P GF FV
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFV 69
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Frame = +1
Query: 127 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFV 249
K++VG L +N + + + +S++G I ++ V R+P GF FV
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFV 69
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Frame = +1
Query: 127 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP-----GFAFV 249
K++VG L +N + + + +S++G I ++ V R+P GF FV
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFV 69
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFV 249
VYVGN+ + ++ +FS YG+I V + + +AFV
Sbjct: 239 VYVGNISQQTTDADLRDLFSTYGDIAEVRIFKT-QRYAFV 277
>Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical
protein T11G6.8 protein.
Length = 408
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEK----IFSKYGNIRNVWVARNPPGFAFVELKT 261
+Y+GNLG + ++ EK F +YG+IR + V G AF+E T
Sbjct: 237 LYIGNLGPSGAQQVTEKDLNDFFYQYGDIRCLRVL-TEKGCAFIEFTT 283
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEKIFSKYGNIRNVWV----ARNPPGFAFVELKTPVMLKTLF 285
++VG + S+ ++ + F YG I+ + + A P G+AF+E + T +
Sbjct: 106 LFVGRINYETSESKLRREFEAYGKIKKLTMVHDEAGKPRGYAFIEYSDKAEMHTAY 161
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +1
Query: 127 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 237
K+++G L ++ + +IF+K+G+I + V R+ G
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDG 179
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +1
Query: 127 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 237
K+++G L ++ + +IF+K+G+I + V R+ G
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDG 179
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +1
Query: 127 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 237
K+++G L ++ + +IF+K+G+I + V R+ G
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDG 179
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +1
Query: 127 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 237
K+++G L ++ + +IF+K+G+I + V R+ G
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDG 179
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +1
Query: 127 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 237
K+++G L ++ + +IF+K+G+I + V R+ G
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDG 179
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +1
Query: 127 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 237
K+++G L ++ + +IF+K+G+I + V R+ G
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDG 179
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +1
Query: 127 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 237
K+++G L ++ + +IF+K+G+I + V R+ G
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDG 179
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFV 249
V+V N G + + ++ +FSK+G I + V + P GF FV
Sbjct: 240 VFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFV 283
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFV 249
V+V N G + + ++ +FSK+G I + V + P GF FV
Sbjct: 240 VFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFV 283
>Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Frame = +1
Query: 67 YPPFSIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKY-GNIRNVWVARNPP--- 234
YPP T ++ E + VYVGNL E+ ++F+ Y G + +A P
Sbjct: 146 YPPLPADTDSAKVEE--IRRTVYVGNLPKGVDGNEVLELFNMYFGEVMYARMASGPDALP 203
Query: 235 -GFAFVE 252
+A+VE
Sbjct: 204 CAYAYVE 210
>Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Frame = +1
Query: 67 YPPFSIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKY-GNIRNVWVARNPP--- 234
YPP T ++ E + VYVGNL E+ ++F+ Y G + +A P
Sbjct: 146 YPPLPADTDSAKVEE--IRRTVYVGNLPKGVDGNEVLELFNMYFGEVMYARMASGPDALP 203
Query: 235 -GFAFVE 252
+A+VE
Sbjct: 204 CAYAYVE 210
>U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle
orientation defective protein4 protein.
Length = 351
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +1
Query: 64 FYPPFSIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVA---RNPP 234
F P S+K K + + ++YV N+ + + ++ +F YG + +V + R
Sbjct: 32 FTMPISVKPKTREPASFTDN-RIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGSK 90
Query: 235 GFAFVEL 255
GF FV L
Sbjct: 91 GFGFVTL 97
>AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein.
Length = 351
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +1
Query: 64 FYPPFSIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVA---RNPP 234
F P S+K K + + ++YV N+ + + ++ +F YG + +V + R
Sbjct: 32 FTMPISVKPKTREPASFTDN-RIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGSK 90
Query: 235 GFAFVEL 255
GF FV L
Sbjct: 91 GFGFVTL 97
>U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya binding
family protein 2 protein.
Length = 422
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 121 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN 228
S KV+VG L + + +I FS+YG ++ W +++
Sbjct: 87 SRKVFVGGLPSCVKESDILNFFSRYGRLQVDWPSKH 122
>Z78537-1|CAB01719.1| 182|Caenorhabditis elegans Hypothetical
protein C09F12.1 protein.
Length = 182
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 591 CGVICILLLIIMQPALAVLNFYKCL 665
C V+C++L +I+Q V NF CL
Sbjct: 79 CVVVCMILSLIVQIFAVVYNFLTCL 103
>AF026215-6|AAB71325.1| 516|Caenorhabditis elegans Hypothetical
protein F09G2.8 protein.
Length = 516
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -1
Query: 486 GRVIVNGGEKESDGELKATVVETLTGRESM 397
GR + EKE +GE K T +ET GR M
Sbjct: 4 GRTYLTPHEKEENGERKNTRMETHDGRADM 33
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 127 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 237
+VYV ++ + S+ +++ +F +G I +AR P G
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTG 244
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 127 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 237
+VYV ++ + S+ +++ +F +G I +AR P G
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTG 244
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 127 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 237
+VYV ++ + S+ +++ +F +G I +AR P G
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTG 244
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,581,981
Number of Sequences: 27780
Number of extensions: 314973
Number of successful extensions: 1055
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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