Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00884
(753 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 56 2e-08
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 56 2e-08
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 56 3e-08
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 54 8e-08
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 44 8e-05
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 42 3e-04
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 42 3e-04
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 42 3e-04
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 42 4e-04
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 42 4e-04
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 42 6e-04
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 41 0.001
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 40 0.002
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 38 0.009
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 38 0.009
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 36 0.022
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 36 0.022
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 36 0.038
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 36 0.038
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 35 0.050
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 35 0.050
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 35 0.067
At2g47310.1 68415.m05906 flowering time control protein-related ... 34 0.12
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 33 0.15
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 33 0.15
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 33 0.27
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 33 0.27
At1g43190.1 68414.m04977 polypyrimidine tract-binding protein, p... 33 0.27
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 33 0.27
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 32 0.36
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 32 0.36
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 32 0.36
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 32 0.36
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 32 0.36
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 32 0.36
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 32 0.36
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 32 0.47
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 32 0.47
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 32 0.47
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 31 0.82
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 31 0.82
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 31 1.1
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 31 1.1
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 31 1.1
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 31 1.1
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 31 1.1
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 31 1.1
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 31 1.1
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 31 1.1
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 30 1.4
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 30 1.4
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 30 1.4
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 30 1.9
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 30 1.9
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 30 1.9
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 29 2.5
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 29 2.5
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 29 2.5
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 29 2.5
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 29 3.3
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 29 3.3
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 29 3.3
At5g12080.2 68418.m01415 mechanosensitive ion channel domain-con... 29 4.4
At5g12080.1 68418.m01414 mechanosensitive ion channel domain-con... 29 4.4
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 29 4.4
At1g78410.1 68414.m09137 VQ motif-containing protein contains PF... 29 4.4
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 29 4.4
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 28 5.8
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 28 5.8
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 28 5.8
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 28 5.8
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 28 5.8
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 28 5.8
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 28 5.8
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 28 7.7
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 28 7.7
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 28 7.7
At3g05760.1 68416.m00647 expressed protein 28 7.7
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 28 7.7
At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B, pu... 28 7.7
At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B, pu... 28 7.7
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 56.4 bits (130), Expect = 2e-08
Identities = 23/42 (54%), Positives = 31/42 (73%)
Frame = +1
Query: 127 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVE 252
+VYVGNL ++ E+E F +G +RNVWVAR PPG+AF+E
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLE 44
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 56.4 bits (130), Expect = 2e-08
Identities = 23/42 (54%), Positives = 31/42 (73%)
Frame = +1
Query: 127 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVE 252
+VYVGNL ++ E+E F +G +RNVWVAR PPG+AF+E
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLE 44
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 56.0 bits (129), Expect = 3e-08
Identities = 22/46 (47%), Positives = 33/46 (71%)
Frame = +1
Query: 127 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVELKTP 264
+VYVGNL ++ E+E F +G +R+VWVAR PPG+AF++ + P
Sbjct: 3 RVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDP 48
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 255 EDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 344
EDPRDA D++R LDG G R+ + G
Sbjct: 46 EDPRDARDAIRALDGKN--GWRVEQSHNRG 73
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 54.4 bits (125), Expect = 8e-08
Identities = 22/44 (50%), Positives = 32/44 (72%)
Frame = +1
Query: 127 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVELK 258
+VYVGNL ++ E+E F +G IR+VWVAR PPG+AF++ +
Sbjct: 3 RVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFE 46
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 44.4 bits (100), Expect = 8e-05
Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFAFVELKTP 264
+YVGNL + K E+E +F KYG I ++ + PPG+AFVE + P
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDP 55
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = +3
Query: 255 EDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 344
EDPRDA+D++ G DG G R+RVE+++G
Sbjct: 53 EDPRDADDAIYGRDGYDFDGCRLRVEIAHG 82
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/43 (48%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFAFVE 252
VYVGNL + + E+E +FSKYG + + V PPG+AFVE
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVE 51
Score = 35.9 bits (79), Expect = 0.029
Identities = 15/30 (50%), Positives = 22/30 (73%)
Frame = +3
Query: 255 EDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 344
+D RDAED++ G DG G R+RVE+++G
Sbjct: 53 DDARDAEDAIHGRDGYDFDGHRLRVELAHG 82
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/43 (48%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFAFVE 252
VYVGNL + + E+E +FSKYG + + V PPG+AFVE
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVE 51
Score = 35.9 bits (79), Expect = 0.029
Identities = 15/30 (50%), Positives = 22/30 (73%)
Frame = +3
Query: 255 EDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 344
+D RDAED++ G DG G R+RVE+++G
Sbjct: 53 DDARDAEDAIHGRDGYDFDGHRLRVELAHG 82
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/43 (48%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFAFVE 252
VYVGNL + + E+E +FSKYG + + V PPG+AFVE
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVE 51
Score = 35.9 bits (79), Expect = 0.029
Identities = 15/30 (50%), Positives = 22/30 (73%)
Frame = +3
Query: 255 EDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 344
+D RDAED++ G DG G R+RVE+++G
Sbjct: 53 DDARDAEDAIHGRDGYDFDGHRLRVELAHG 82
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFAFVELK 258
+YVGNL + + E+E +FSKYG + + + PPG+AFVE +
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFE 53
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +3
Query: 255 EDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 344
ED RDA+D++ G DG G +RVE+++G
Sbjct: 53 EDARDADDAIYGRDGYDFDGHHLRVELAHG 82
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFAFVELK 258
+YVGNL + + E+E +FSKYG + + + PPG+AFVE +
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFE 53
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +3
Query: 255 EDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 344
ED RDA+D++ G DG G +RVE+++G
Sbjct: 53 EDARDADDAIYGRDGYDFDGHHLRVELAHG 82
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 41.5 bits (93), Expect = 6e-04
Identities = 20/57 (35%), Positives = 35/57 (61%)
Frame = +1
Query: 94 MSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVELKTP 264
M RY + + ++YVG L + ++E++FS+YG +R+V + R+ +AFVE P
Sbjct: 1 MPRYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFSDP 54
Score = 32.3 bits (70), Expect = 0.36
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +3
Query: 258 DPRDAEDSVRGLDGTRCCGTRIRVEMSNG 344
DPRDA+D+ LDG G+RI VE S G
Sbjct: 53 DPRDADDARYYLDGRDFDGSRITVEASRG 81
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/57 (35%), Positives = 35/57 (61%)
Frame = +1
Query: 94 MSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVELKTP 264
M RY + + ++YVG L + ++E++FS+YG +R+V + R+ +AFVE P
Sbjct: 1 MPRYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD---YAFVEFGDP 54
Score = 33.5 bits (73), Expect = 0.15
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +3
Query: 258 DPRDAEDSVRGLDGTRCCGTRIRVEMSNG 344
DPRDA+D+ LDG G+RI VE S G
Sbjct: 53 DPRDADDARHYLDGRDFDGSRITVEFSRG 81
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +3
Query: 240 CICRIEDPRDAEDSVRGLDGTRCCGTRIRVEMSNG 344
C E RDAED+++G DG G R+RVE+++G
Sbjct: 48 CFVEFEHSRDAEDAIKGRDGYNLDGCRLRVELAHG 82
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +1
Query: 121 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNV--WVARNPPGFAFVELK 258
S +YVGNL + ++EIE IF KYG I ++ V PP + FVE +
Sbjct: 6 SRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFE 53
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 37.5 bits (83), Expect = 0.009
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Frame = +1
Query: 118 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR----NPPGFAFVELKT 261
L K++VG L N S+ E++ +FSKYG I+++ + R G AF++ +T
Sbjct: 104 LEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYET 155
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 37.5 bits (83), Expect = 0.009
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Frame = +1
Query: 118 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR----NPPGFAFVELKT 261
L K++VG L N S+ E++ +FSKYG I+++ + R G AF++ +T
Sbjct: 104 LEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYET 155
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 36.3 bits (80), Expect = 0.022
Identities = 15/43 (34%), Positives = 30/43 (69%)
Frame = +1
Query: 100 RYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN 228
R R L K++VG+L A++ E+E+IF ++G++ +V++ R+
Sbjct: 203 RERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD 245
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 36.3 bits (80), Expect = 0.022
Identities = 15/43 (34%), Positives = 30/43 (69%)
Frame = +1
Query: 100 RYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN 228
R R L K++VG+L A++ E+E+IF ++G++ +V++ R+
Sbjct: 203 RERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD 245
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 35.5 bits (78), Expect = 0.038
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Frame = +1
Query: 127 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP----PGFAFVE 252
++YVGNL N S+ ++ K+F +G++ V V R+ GF FV+
Sbjct: 286 RLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQ 331
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 35.5 bits (78), Expect = 0.038
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Frame = +1
Query: 91 KMSRYREWDLSC----KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR 225
++ R D SC K++VG L N S+ E++ +FS+YG I+++ + R
Sbjct: 94 ELERLDVLDCSCNPEHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILR 142
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 35.1 bits (77), Expect = 0.050
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = +1
Query: 115 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVELKTPVMLKT 279
D KVYVGNL +K +E +FS+ G + + V+R P GF FV + ++
Sbjct: 174 DSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEA 233
Query: 280 LFVDL 294
V L
Sbjct: 234 AIVAL 238
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 35.1 bits (77), Expect = 0.050
Identities = 14/36 (38%), Positives = 25/36 (69%)
Frame = +1
Query: 118 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR 225
L K++VG L N S+ E++ +FS+YG I+++ + R
Sbjct: 98 LEHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILR 133
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 34.7 bits (76), Expect = 0.067
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Frame = +1
Query: 115 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVELKT 261
D C ++VG L + ++ + ++ SKYG I+N+ + R+ G+ FVE +T
Sbjct: 61 DPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYET 114
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 33.9 bits (74), Expect = 0.12
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 127 KVYVGNLGTNASKYEIEKIFSKYGNIRNV 213
K+YV + A++Y+I ++F KYGN+ +
Sbjct: 111 KLYVAPISKTATEYDIRQVFEKYGNVTEI 139
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Frame = +1
Query: 127 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP----PGFAFVELKTPVM 270
K+YV L +K E+ ++FS+YG I ++++A + G+AFV+ M
Sbjct: 208 KLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEM 259
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 33.5 bits (73), Expect = 0.15
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +3
Query: 258 DPRDAEDSVRGLDGTRCCGTRIRVEMSNG 344
DPRDA+D+ LDG G+RI VE S G
Sbjct: 12 DPRDADDARHYLDGRDFDGSRITVEFSRG 40
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 33.5 bits (73), Expect = 0.15
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +3
Query: 258 DPRDAEDSVRGLDGTRCCGTRIRVEMSNG 344
DPRDA+D+ LDG G+RI VE S G
Sbjct: 23 DPRDADDARHYLDGRDFDGSRITVEFSRG 51
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 32.7 bits (71), Expect = 0.27
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Frame = +1
Query: 106 REWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVEL 255
R +D + ++YVGNL + +E++FS++G + + V + GF FV++
Sbjct: 201 RVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQM 255
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 32.7 bits (71), Expect = 0.27
Identities = 14/30 (46%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = +1
Query: 124 CK-VYVGNLGTNASKYEIEKIFSKYGNIRN 210
CK ++VG +G N SK ++E+ FSK+G I +
Sbjct: 249 CKSLWVGGIGPNVSKDDLEEEFSKFGKIED 278
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/43 (30%), Positives = 27/43 (62%)
Frame = +1
Query: 121 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFV 249
S ++VG+L ++ ++ ++F +YG+I + V + GFAF+
Sbjct: 17 SNNLWVGSLTPETTESDLTELFGRYGDIDRITV-YSSRGFAFI 58
>At1g43190.1 68414.m04977 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599, [Homo sapiens] GI:35770; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 432
Score = 32.7 bits (71), Expect = 0.27
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 124 CKVYVGNLGTNA-SKYEIEKIFSKYGNIRNVWVARNPPGFAFVEL 255
C V V NL ++ + ++ +FS YGNI + + RN P A V++
Sbjct: 245 CTVLVSNLNADSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQM 289
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 32.7 bits (71), Expect = 0.27
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Frame = +1
Query: 91 KMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP----GFAFVELK 258
+++R+ E +Y+ NL + +++++FS+YGN+ + V NP GF FV
Sbjct: 322 RINRF-EKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYS 380
Query: 259 TP 264
P
Sbjct: 381 NP 382
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 237
VYV NL + E+ K F K+G I + V R+ G
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSG 266
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 32.3 bits (70), Expect = 0.36
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +1
Query: 136 VGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFV 249
VGN+ +N YE++ +F ++G+I+ + A GF V
Sbjct: 221 VGNISSNVEDYELKVLFEQFGDIQALHTACKNRGFIMV 258
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 32.3 bits (70), Expect = 0.36
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Frame = +1
Query: 127 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP-----PGFAFVE 252
K+YVGNL N S+ ++ +IF +G + V + +P GF F++
Sbjct: 266 KLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQ 312
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 32.3 bits (70), Expect = 0.36
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +3
Query: 258 DPRDAEDSVRGLDGTRCCGTRIRVEMSNG 344
DPRDA+D+ LDG G+RI VE S G
Sbjct: 12 DPRDADDARYYLDGRDFDGSRITVEASRG 40
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 32.3 bits (70), Expect = 0.36
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFV 249
VYVGN + ++E++FSK+G ++ V + G+AFV
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDM---KSGYAFV 40
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 32.3 bits (70), Expect = 0.36
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +1
Query: 127 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP 231
+++VG+L AS+ +++K+F G + V + +NP
Sbjct: 215 EIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNP 249
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 32.3 bits (70), Expect = 0.36
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Frame = +1
Query: 100 RYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIR--NVWVARN---PPGFAFV 249
R + +L +++VG L + ++ ++E F +YG I + V R+ P GF F+
Sbjct: 4 RENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFI 58
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 32.3 bits (70), Expect = 0.36
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Frame = +1
Query: 100 RYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIR--NVWVARN---PPGFAFV 249
R + +L +++VG L + ++ ++E F +YG I + V R+ P GF F+
Sbjct: 4 RENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFI 58
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 31.9 bits (69), Expect = 0.47
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVELKTP 264
+Y+G + + EIE FS++G ++ V VARN F F++ + P
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDP 111
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 31.9 bits (69), Expect = 0.47
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = +1
Query: 121 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNP----PGFAFVELKTP 264
S +YV NL + S ++++IFS +G + + V R+P G FV TP
Sbjct: 131 SSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATP 182
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 31.9 bits (69), Expect = 0.47
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG----FAFVELKTP 264
VYV NL + E++K F KYG+I + V ++ G F FV +P
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSP 275
Score = 31.5 bits (68), Expect = 0.62
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Frame = +1
Query: 91 KMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPP----GFAFVELK 258
++SR+ + S +Y+ NL + + +++++FS+YGN+ + V N GF FV
Sbjct: 318 RISRFEKLQGS-NLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYS 376
Query: 259 TP 264
P
Sbjct: 377 NP 378
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 31.1 bits (67), Expect = 0.82
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVELK 258
V+ GN +A + ++E++F KYG + V + GFAFV ++
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDM---KAGFAFVYME 43
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +3
Query: 252 IEDPRDAEDSVRGLDGTRC--CGTRIRVE 332
+ED RDAED++R LD G R+RVE
Sbjct: 42 MEDERDAEDAIRALDRFEYGRTGRRLRVE 70
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 31.1 bits (67), Expect = 0.82
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVELK 258
V+ GN +A + ++E++F KYG + V + GFAFV ++
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDM---KAGFAFVYME 43
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +3
Query: 252 IEDPRDAEDSVRGLDGTRC--CGTRIRVE 332
+ED RDAED++R LD G R+RVE
Sbjct: 42 MEDERDAEDAIRALDRFEYGRTGRRLRVE 70
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVELK 258
V+ GN +A + ++E++F KYG + V + GFAFV ++
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDM---KAGFAFVYME 43
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +3
Query: 252 IEDPRDAEDSVRGLDGTRC--CGTRIRVE 332
+ED RDAED++R LD G R+RVE
Sbjct: 42 MEDERDAEDAIRALDRFEFGRKGRRLRVE 70
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Frame = +1
Query: 121 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVELKT 261
+C VY+GN+ S + I + G + ++ + R+ P GFAF E +T
Sbjct: 6 NCTVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYET 57
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +1
Query: 163 KYEIEKIFSKYGNIRNVWVARNPPGFAFVELKT 261
+++IEK F YG + NV + RN F+FV+ +T
Sbjct: 107 EHDIEKHFEPYGKVTNVRIRRN---FSFVQFET 136
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFV 249
V+VGN + ++E++F KYG + V + G+AFV
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDM---KSGYAFV 40
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Frame = +1
Query: 127 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVELKTPVMLKTLFVD 291
K+++G L + + K F KYG I + + R+ P GF F+ P ++ + D
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +1
Query: 127 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN 228
K++VG + + ++ E++ F+KYGN+ V R+
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRD 143
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Frame = +1
Query: 127 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVELKTPVMLKTLFVD 291
K+++G L + + K F KYG I + + R+ P GF F+ P ++ + D
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +1
Query: 127 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN 228
K++VG + + ++ E++ F+KYGN+ V R+
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRD 143
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Frame = +1
Query: 64 FYPPFSIKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG-- 237
F PF K + + VYV NL + E++ F +YG+I + V R+ G
Sbjct: 205 FVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKS 264
Query: 238 --FAFVELKTP 264
F FV + P
Sbjct: 265 RCFGFVNFENP 275
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPG 237
+YV NL + ++ ++F+++G I + V R+P G
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSG 365
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFV 249
++V N+ +N E+ +F +YG+IR ++ GF +
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMI 209
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFV 249
++V N+ +N E+ +F +YG+IR ++ GF +
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMI 209
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVELKTPVMLKTL 282
V+VGNL K I K FSK+G + +V + P + K +MLK +
Sbjct: 173 VFVGNLPLKVKKKVILKEFSKFGEVESVRIRSVPIVDSKRTRKGAIMLKQI 223
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = +1
Query: 115 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFV 249
D + K++VG L + E K F KYG I + + ++ P GF FV
Sbjct: 39 DSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFV 88
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 118 LSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN 228
++ +VYVGNL + + + FS YGN+ + V R+
Sbjct: 1 MATRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRD 37
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVA--RNPPGFAFV 249
+YV NL N + E+ IF KYG IR + + + G AFV
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFV 62
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEKIFSKYGNIRNV 213
++V NL ++ S E+ IFS YG IR V
Sbjct: 297 LWVNNLDSSISNEELHGIFSSYGEIREV 324
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Frame = +1
Query: 127 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVAR-----NPPGFAFV 249
K++VG + S+ +++ FS+YG + VA+ P GF FV
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFV 52
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +1
Query: 121 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVE 252
S +YVGN+ + E+++ F G + V + + P GFA+VE
Sbjct: 102 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVE 149
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Frame = +1
Query: 127 KVYVGNLGTNASKYEIEKIFSKYGNIRNV-----WVARNPPGFAFVELKT 261
K++VGNL N ++ ++F GN+ V V GF FV + T
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMST 149
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Frame = +1
Query: 127 KVYVGNLGTNASKYEIEKIFSKYGNIRNV-----WVARNPPGFAFVELKT 261
K++VGNL N ++ ++F GN+ V V GF FV + T
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMST 149
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Frame = +1
Query: 115 DLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVW-----VARNPPGFAFVELKT 261
D +++ NL + +K E+++ F+ +G + ++ V + P G AFV+ KT
Sbjct: 558 DFERTLFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKFKT 611
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Frame = +1
Query: 121 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWV-----ARNPPGFAFV 249
S VY+GN+ ++ ++ ++FS+ G I+ + + + P GF FV
Sbjct: 33 STTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFV 80
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +1
Query: 106 REWDLSCKVYVGNLGTNASKYEIEKIFSKYGNI 204
R ++ + +VYVGNL + +E++FS++G +
Sbjct: 238 RVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKV 270
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEKIFSKYGN--IRNVWVARNPPGFAFVELKTPV 267
VYVGNL S+ ++ + F G I V V R+ GF FV T V
Sbjct: 262 VYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRD-KGFGFVRYSTHV 308
>At5g12080.2 68418.m01415 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein contains Pfam profile PF00924:
Mechanosensitive ion channel
Length = 734
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +2
Query: 14 VVASD*KIKFSEIL*IIFIHPFQSKLRCLATENGIFLAKCTWATWVLMRLNMK*KKYFLN 193
++ S K F I+ + +HP+ RC+ + + + T V ++LN + K Y+ N
Sbjct: 554 IIGSTCKNLFESIVFVFVMHPYDVGDRCVVDGVAMLVEEMNLLTTVFLKLNNE-KVYYPN 612
Query: 194 TV 199
V
Sbjct: 613 AV 614
>At5g12080.1 68418.m01414 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein contains Pfam profile PF00924:
Mechanosensitive ion channel
Length = 734
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +2
Query: 14 VVASD*KIKFSEIL*IIFIHPFQSKLRCLATENGIFLAKCTWATWVLMRLNMK*KKYFLN 193
++ S K F I+ + +HP+ RC+ + + + T V ++LN + K Y+ N
Sbjct: 554 IIGSTCKNLFESIVFVFVMHPYDVGDRCVVDGVAMLVEEMNLLTTVFLKLNNE-KVYYPN 612
Query: 194 TV 199
V
Sbjct: 613 AV 614
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Frame = +1
Query: 82 IKTKMSRYREWDLSCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAF 246
I + S + ++ S VYVG + + ++ ++ +FS+YG I +V + R+ GFAF
Sbjct: 22 ISDEASWHAKYKNSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAF 81
Query: 247 V 249
+
Sbjct: 82 L 82
>At1g78410.1 68414.m09137 VQ motif-containing protein contains
PF05678: VQ motif
Length = 108
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 480 VIVNGGEKESDGELKATVVETLTGRESMIGGGDYD 376
V +N E+D TVV+ LTG+ +++ G +D
Sbjct: 15 VFINTQYVETDARSFKTVVQELTGKNAIVAAGPFD 49
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Frame = +1
Query: 121 SCKVYVGNLGTNASKYEIEKIFSKYGNI--RNVWVAR---NPPGFAFV 249
S K++VG + + ++ + + FSKYG + + V R GFAFV
Sbjct: 33 SSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFV 80
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +3
Query: 252 IEDPRDAEDSVRGLDGTRC--CGTRIRVE 332
+ED RDAED++R LD G R+RVE
Sbjct: 1 MEDERDAEDAIRALDRFEFGRKGRRLRVE 29
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -2
Query: 311 TAACSIKSTNRVFSITGVFNSTNANPGGFRATHTLRMLPYLENIFSISYLD 159
+A ++K+ NR ++ PGG R L+M P LE S SYL+
Sbjct: 270 SADAALKALNRTEIAGKRIKLEHSRPGGARRNMMLQMNPELEQDDSYSYLN 320
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1
Query: 136 VGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVE 252
V NL + S ++E IF YG I+ + N FVE
Sbjct: 226 VFNLAPSVSNRDLENIFGVYGEIKEIRETPNKRHHKFVE 264
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Frame = +1
Query: 127 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVELKTPVML 273
K++VG + + ++ + F+ YG + V R+ P GF FV P +L
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVL 60
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +1
Query: 121 SCKVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVELKTP 264
S VYV NL + + +FS+YG + +V V R+ GF FV P
Sbjct: 201 STNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNP 252
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Frame = +1
Query: 127 KVYVGNLGTNASKYEIEKIFSKYGNIRNV-----WVARNPPGFAFVELKT 261
K+YV L ++ + F ++GN+ ++ VA P GFAF+ +T
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYET 127
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEKIFSKYGN--IRNVWVARNPPGFAFVELKT 261
VYVGNL ++ ++ ++F G I V V R+ GF FV T
Sbjct: 275 VYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRD-KGFGFVRYNT 319
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEKIFSKYGN--IRNVWVARNPPGFAFVELKT 261
VYVGNL ++ ++ ++F G I V V R+ GF FV T
Sbjct: 271 VYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRD-KGFGFVRYNT 315
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVE 252
VYVGN+ + E++ F G + V + + P GFA+VE
Sbjct: 91 VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVE 135
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN----PPGFAFVE 252
VYVGN+ + E++ F G + V + + P GFA+VE
Sbjct: 91 VYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVE 135
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/60 (20%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Frame = +1
Query: 127 KVYVGNLGTNASKYEIEKIFSKYGNIRNVWVARN-----PPGFAFVELKTPVMLKTLFVD 291
K+++G + + + +++ F KYG++ + R+ GF F+ P + + + +D
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMD 75
>At3g05760.1 68416.m00647 expressed protein
Length = 202
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 234 RICICRIEDPRDAEDSVRGLDGTRCCGTRIRVEMSN 341
R+C C ++D + D + G R G +RVE S+
Sbjct: 86 RVCDCVVKDSANYLDHINGKKHQRALGMSMRVERSS 121
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEKIFSKYGNIRN--VWVARN--PPGFAFVELKT 261
+YV NL + ++E++FS++G I + V V N G FVE T
Sbjct: 225 LYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFST 272
>At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 228
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/46 (23%), Positives = 23/46 (50%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVELKTPV 267
+++ NL + ++ +F +Y + + + PG AFVE + V
Sbjct: 156 LFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDV 201
>At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 229
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/46 (23%), Positives = 23/46 (50%)
Frame = +1
Query: 130 VYVGNLGTNASKYEIEKIFSKYGNIRNVWVARNPPGFAFVELKTPV 267
+++ NL + ++ +F +Y + + + PG AFVE + V
Sbjct: 157 LFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDV 202
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,393,246
Number of Sequences: 28952
Number of extensions: 282531
Number of successful extensions: 991
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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