Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00883
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar...    39   7e-04
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   4.0  
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    26   5.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   7.1  

>SPBC530.10c |anc1||adenine nucleotide carrier
           Anc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 39.1 bits (87), Expect = 7e-04
 Identities = 16/33 (48%), Positives = 25/33 (75%)
 Frame = +1

Query: 61  GNLAFFKGAFSNVLRGTGGAFVLVLYDEIKKVL 159
           G  +FFKGA +N+LRG  GA VL +YD+++ ++
Sbjct: 285 GARSFFKGAGANILRGVAGAGVLSIYDQVQLLM 317


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -3

Query: 771 RFRHQFNKSQMSALHNQLQNHMDFTFNSIMCTEVKNTLHNYVK 643
           RF    + +++ A+ N+L+N    +   I  T++KN LH Y K
Sbjct: 612 RFTEDVSDTELIAM-NELRNLPMASSAIIWATQLKNRLHEYTK 653


>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 129 EHEGTTSTSEDVGEGSLEEGEVPSVL 52
           +HE  +ST+  V +GSLE  E P+ L
Sbjct: 260 KHEALSSTANIVKDGSLERTEPPNSL 285


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 134  KTSTKAPPVPLRTLEKAPL 78
            K S+KAPPVPL + +  P+
Sbjct: 1016 KLSSKAPPVPLPSADAPPI 1034


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,974,128
Number of Sequences: 5004
Number of extensions: 56783
Number of successful extensions: 138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)