Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00882
         (788 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q3IHA4 Cluster: Putative uncharacterized protein; n=4; ...    33   6.2  

>UniRef50_Q3IHA4 Cluster: Putative uncharacterized protein; n=4;
           Alteromonadales|Rep: Putative uncharacterized protein -
           Pseudoalteromonas haloplanktis (strain TAC 125)
          Length = 441

 Score = 33.5 bits (73), Expect = 6.2
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = -2

Query: 265 GEGRFRSITSLARSSLFSPY-TVAPSSFVRFGI-LRLPITIMYGILILYINYFCVRT 101
           G G F +     +S  FS Y   A + +++F + L +P T+  G+LILY  + C+ T
Sbjct: 316 GGGTFYTAFPAYQSEPFSGYYDNAHNDYIQFAVELGIPATLALGLLILYCLWLCIAT 372


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 659,940,035
Number of Sequences: 1657284
Number of extensions: 11817772
Number of successful extensions: 25242
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 24624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25234
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 67085240885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)