Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00882
         (788 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0459 + 16159015-16159771,16160251-16160365,16160478-161608...    29   3.2  
06_03_1355 - 29522847-29523494                                         28   7.4  
11_01_0268 - 2029007-2029464,2029521-2029615,2030815-2031077,203...    28   9.7  

>04_03_0459 +
           16159015-16159771,16160251-16160365,16160478-16160844,
           16160930-16161244,16161324-16161644,16161730-16161882
          Length = 675

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +1

Query: 298 SRSSDTKGLHFSRGESYSRSIRLRRCVPRDGDDQREPRTRLVHDVQE 438
           SR+ D +G HF R  +Y R  R   C   +  D   P   L   +QE
Sbjct: 499 SRNPDIRGRHFFRCPNYDRETRTTACAYIEWVDTENPVLDLTTCLQE 545


>06_03_1355 - 29522847-29523494
          Length = 215

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +3

Query: 120 LIYKIRMPYIMVMGSLRMPNLTKDEGATV 206
           LIYK RMPY +V+   ++  L  D+G T+
Sbjct: 53  LIYKPRMPY-LVVSDAQLVRLDYDQGGTI 80


>11_01_0268 -
           2029007-2029464,2029521-2029615,2030815-2031077,
           2031154-2031279,2031404-2032996
          Length = 844

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +1

Query: 268 GDSFLVGSGESRSSDTKGLHFSRGESYSRSIRLRRCVPRDGDDQR 402
           GD+  VG  +  ++ T  L    G    RS+RLRR    DG  +R
Sbjct: 176 GDARCVGQRKD-AAPTHQLRIGAGRDQGRSVRLRRDAREDGRGRR 219


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,463,638
Number of Sequences: 37544
Number of extensions: 321723
Number of successful extensions: 635
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)