Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00882
         (788 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59688| Best HMM Match : K-box (HMM E-Value=0.25)                    30   1.9  
SB_34190| Best HMM Match : MAM (HMM E-Value=0)                         29   4.3  
SB_11216| Best HMM Match : GILT (HMM E-Value=6.7e-10)                  28   9.9  

>SB_59688| Best HMM Match : K-box (HMM E-Value=0.25)
          Length = 884

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +1

Query: 274 SFLVGSGESRSSDTKGLHFSRGESYSRSIRLRRCVPRDGDDQREPRTRLVHD 429
           S L G GE RSS       S  ++  + I  RR   R+ D++  PR +L+++
Sbjct: 438 SSLTGGGEGRSSPELTRPLSEYKNLQKLIDDRRETERELDERMSPRAKLLYE 489


>SB_34190| Best HMM Match : MAM (HMM E-Value=0)
          Length = 384

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +1

Query: 262 HHGDSFLVGSGESRSSDTKGLHFS--RGESYSRSIRLRRCVPRDGD 393
           +HG+ +L G  + +SSDT  + F   RG SY   I L     R+GD
Sbjct: 281 NHGNQWLQGLVDIKSSDTYQVMFEAIRGTSYYGDIALDDVTFRNGD 326


>SB_11216| Best HMM Match : GILT (HMM E-Value=6.7e-10)
          Length = 311

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +2

Query: 95  IFRTNTKIINI*NQDAVHYGDGKSEDAKSHEG*RRYC 205
           ++ T+ KI NI +   V +GDGK   AKS  G + YC
Sbjct: 49  LYPTSNKIPNILDISMVPFGDGKEIKAKS--GFQYYC 83


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,883,997
Number of Sequences: 59808
Number of extensions: 391002
Number of successful extensions: 751
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)