Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00882
         (788 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006810-2|AAF59631.2|  297|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z77133-6|CAB00869.1|  338|Caenorhabditis elegans Hypothetical pr...    28   8.8  
Z69794-6|CAA93683.1|  338|Caenorhabditis elegans Hypothetical pr...    28   8.8  

>AC006810-2|AAF59631.2|  297|Caenorhabditis elegans Hypothetical
           protein Y5H2B.4 protein.
          Length = 297

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/66 (25%), Positives = 28/66 (42%)
 Frame = -2

Query: 217 FSPYTVAPSSFVRFGILRLPITIMYGILILYINYFCVRTKNITGKCYST*FSTIKLLVIS 38
           F P +V P   + +G+   P+   +    L I Y CV        C+   ++T K +V  
Sbjct: 125 FFPNSVIPIIAIGYGVFEYPVLYSFCNFELNIPYGCVTLSCSLNLCFYQYWTTYKTIVYI 184

Query: 37  LVEMRT 20
           L  + T
Sbjct: 185 LTFLST 190


>Z77133-6|CAB00869.1|  338|Caenorhabditis elegans Hypothetical
           protein R03G8.5 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -2

Query: 154 TIMYGILILYINYFCVRTKNIT 89
           T+++G+L++ +N FCVR   IT
Sbjct: 23  TLIFGLLLIILNIFCVRGVFIT 44


>Z69794-6|CAA93683.1|  338|Caenorhabditis elegans Hypothetical
           protein R03G8.5 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -2

Query: 154 TIMYGILILYINYFCVRTKNIT 89
           T+++G+L++ +N FCVR   IT
Sbjct: 23  TLIFGLLLIILNIFCVRGVFIT 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,308,756
Number of Sequences: 27780
Number of extensions: 287749
Number of successful extensions: 647
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)