Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00882
         (788 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   3.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   3.2  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   4.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.9  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -2

Query: 184 VRFGILRLPITIMYGILILYINYFCVRTKNITGKC 80
           VR     L I ++ G+L+ Y+N F +     T  C
Sbjct: 546 VRASGRELTIILLAGVLVCYLNTFLLLATPTTVTC 580


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -2

Query: 184 VRFGILRLPITIMYGILILYINYFCVRTKNITGKC 80
           VR     L I ++ G+L+ Y+N F +     T  C
Sbjct: 636 VRASGRELTIILLAGVLVCYLNTFLLLATPTTVTC 670


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 722 SIKIIQSYSYLDSLNRI 772
           S+KIIQ+ +Y   +NRI
Sbjct: 357 SVKIIQNLAYSGRMNRI 373


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +3

Query: 153 VMGSLRMPNLTKDEGATVYGLNSEE 227
           ++G+   PN+  +EG  + G+  EE
Sbjct: 44  LVGTPAAPNMPAEEGEGMAGVTGEE 68


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,861
Number of Sequences: 438
Number of extensions: 3529
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)