Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00881
         (690 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0697 - 5743089-5744902,5745091-5745751,5747918-5748910           30   1.5  
10_01_0319 - 3504800-3505315,3505575-3505769                           29   3.5  
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353...    29   3.5  
11_01_0668 + 5441363-5441728,5442136-5442291,5442359-5442619           28   8.0  
08_01_0603 + 5308333-5308659,5309688-5309813,5309896-5311470           28   8.0  

>11_01_0697 - 5743089-5744902,5745091-5745751,5747918-5748910
          Length = 1155

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -1

Query: 219 SRACGDYYHNYILLHRRDLVND 154
           S+  GDY+ N+ILL   DLV+D
Sbjct: 330 SKTAGDYHDNFILLTMHDLVHD 351


>10_01_0319 - 3504800-3505315,3505575-3505769
          Length = 236

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 252 YLHRVRVGVFKDVITAHQYRVGETIYQHWG 341
           YLH++  G +  V  A   R GET+   WG
Sbjct: 37  YLHKLGAGSYGVVYKARDRRTGETVAVKWG 66


>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
            3536083-3536226,3536974-3537375,3537499-3537721,
            3537830-3542368,3542480-3542599,3543005-3543038,
            3543922-3544102,3544198-3544815,3545022-3551098,
            3551139-3551304,3551508-3551614,3552056-3552178,
            3553417-3553642
          Length = 5100

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +3

Query: 108  KQLTNSHKTTC*VHNDR*LNLFGV--IKCNYDNNHHTLEIEAFLRRLF 245
            K+ +     +C V N + L L G   + C+Y +N HT  +  + RRLF
Sbjct: 2973 KEKSADKDKSCKVPNTKDLKLDGYQDVLCSYISNAHTTFVRRYARRLF 3020


>11_01_0668 + 5441363-5441728,5442136-5442291,5442359-5442619
          Length = 260

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -1

Query: 615 LKECYAIALPRQSPSATRLFIFXVLSLCIHGVYLDYNSLV 496
           +K+CY   L   SPS   L I   +  C +   +D+ SLV
Sbjct: 1   MKDCYVGGLEMWSPSLKHLSITYCVFYCDYRTRMDFPSLV 40


>08_01_0603 + 5308333-5308659,5309688-5309813,5309896-5311470
          Length = 675

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -1

Query: 237 ASKTPQSRACGDYY--HNYILLHRRDLVNDRYGLNTSSCDCLSIV 109
           AS+    RAC ++   H  + L R+D V+ RYGL   +   +S++
Sbjct: 98  ASRHAADRACLEHIPRHLQVQLLRKDHVSTRYGLKNETSSPISVL 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,072,517
Number of Sequences: 37544
Number of extensions: 301519
Number of successful extensions: 482
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)